If more than 50 genes/sequences are provided as input, then the associated running time can take some time. Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes. After processing you will be send an email with a link to the created phylogenetic tree.
The selection modi are exclusive: please choose either Gene selection or Species selection.
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ), 'gf_id' => 'HOM05D000584', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000584' ), 'data_identifier' => 'HOM05D000584', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ) $gf_id = 'HOM05D000584' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000584' ) $data_identifier = 'HOM05D000584' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 23, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 11, 'fan' => (int) 33, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 29, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 8, 'egut' => (int) 12, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 14, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 10, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 12, 'ugi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427430' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":"";
$selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":"";
$num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ), 'gf_id' => 'HOM05D000584', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000584' ), 'data_identifier' => 'HOM05D000584', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ) $gf_id = 'HOM05D000584' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000584' ) $data_identifier = 'HOM05D000584' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 23, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 11, 'fan' => (int) 33, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 29, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 8, 'egut' => (int) 12, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 14, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 10, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 12, 'ugi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427430' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ), 'gf_id' => 'HOM05D000584', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000584' ), 'data_identifier' => 'HOM05D000584', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ) $gf_id = 'HOM05D000584' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000584' ) $data_identifier = 'HOM05D000584' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 23, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 11, 'fan' => (int) 33, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 29, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 8, 'egut' => (int) 12, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 14, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 10, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 12, 'ugi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427430' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ), 'gf_id' => 'HOM05D000584', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000584' ), 'data_identifier' => 'HOM05D000584', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ) $gf_id = 'HOM05D000584' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000584' ) $data_identifier = 'HOM05D000584' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 23, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 11, 'fan' => (int) 33, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 29, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 8, 'egut' => (int) 12, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 14, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 10, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 12, 'ugi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427430' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ), 'gf_id' => 'HOM05D000584', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000584' ), 'data_identifier' => 'HOM05D000584', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ) $gf_id = 'HOM05D000584' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000584' ) $data_identifier = 'HOM05D000584' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 23, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 11, 'fan' => (int) 33, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 29, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 8, 'egut' => (int) 12, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 14, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 10, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 12, 'ugi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427430' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ), 'gf_id' => 'HOM05D000584', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000584' ), 'data_identifier' => 'HOM05D000584', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ) $gf_id = 'HOM05D000584' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000584' ) $data_identifier = 'HOM05D000584' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 23, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 11, 'fan' => (int) 33, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 29, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 8, 'egut' => (int) 12, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 14, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 10, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 12, 'ugi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427430' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ), 'gf_id' => 'HOM05D000584', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000584' ), 'data_identifier' => 'HOM05D000584', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ) $gf_id = 'HOM05D000584' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000584' ) $data_identifier = 'HOM05D000584' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 23, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 11, 'fan' => (int) 33, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 29, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 8, 'egut' => (int) 12, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 14, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 10, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 12, 'ugi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427430' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ), 'gf_id' => 'HOM05D000584', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000584' ), 'data_identifier' => 'HOM05D000584', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ) $gf_id = 'HOM05D000584' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000584' ) $data_identifier = 'HOM05D000584' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 23, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 11, 'fan' => (int) 33, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 29, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 8, 'egut' => (int) 12, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 14, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 10, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 12, 'ugi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427430' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ), 'gf_id' => 'HOM05D000584', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000584' ), 'data_identifier' => 'HOM05D000584', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ) $gf_id = 'HOM05D000584' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000584' ) $data_identifier = 'HOM05D000584' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 23, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 11, 'fan' => (int) 33, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 29, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 8, 'egut' => (int) 12, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 14, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 10, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 12, 'ugi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427430' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ), 'gf_id' => 'HOM05D000584', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000584' ), 'data_identifier' => 'HOM05D000584', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ) $gf_id = 'HOM05D000584' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000584' ) $data_identifier = 'HOM05D000584' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 23, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 11, 'fan' => (int) 33, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 29, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 8, 'egut' => (int) 12, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 14, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 10, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 12, 'ugi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427430' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ), 'gf_id' => 'HOM05D000584', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000584' ), 'data_identifier' => 'HOM05D000584', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ) $gf_id = 'HOM05D000584' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000584' ) $data_identifier = 'HOM05D000584' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 23, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 11, 'fan' => (int) 33, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 29, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 8, 'egut' => (int) 12, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 14, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 10, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 12, 'ugi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427430' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ), 'gf_id' => 'HOM05D000584', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000584' ), 'data_identifier' => 'HOM05D000584', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ) $gf_id = 'HOM05D000584' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000584' ) $data_identifier = 'HOM05D000584' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 23, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 11, 'fan' => (int) 33, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 29, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 8, 'egut' => (int) 12, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 14, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 10, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 12, 'ugi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427430' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ), 'gf_id' => 'HOM05D000584', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000584' ), 'data_identifier' => 'HOM05D000584', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ) $gf_id = 'HOM05D000584' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000584' ) $data_identifier = 'HOM05D000584' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 23, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 11, 'fan' => (int) 33, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 29, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 8, 'egut' => (int) 12, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 14, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 10, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 12, 'ugi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427430' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ), 'gf_id' => 'HOM05D000584', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000584' ), 'data_identifier' => 'HOM05D000584', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ) $gf_id = 'HOM05D000584' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000584' ) $data_identifier = 'HOM05D000584' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 23, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 11, 'fan' => (int) 33, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 29, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 8, 'egut' => (int) 12, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 14, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 10, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 12, 'ugi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427430' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ), 'gf_id' => 'HOM05D000584', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000584' ), 'data_identifier' => 'HOM05D000584', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ) $gf_id = 'HOM05D000584' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000584' ) $data_identifier = 'HOM05D000584' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 23, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 11, 'fan' => (int) 33, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 29, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 8, 'egut' => (int) 12, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 14, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 10, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 12, 'ugi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427430' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ), 'gf_id' => 'HOM05D000584', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000584' ), 'data_identifier' => 'HOM05D000584', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ) $gf_id = 'HOM05D000584' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000584' ) $data_identifier = 'HOM05D000584' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 23, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 11, 'fan' => (int) 33, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 29, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 8, 'egut' => (int) 12, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 14, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 10, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 12, 'ugi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427430' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ), 'gf_id' => 'HOM05D000584', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000584' ), 'data_identifier' => 'HOM05D000584', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ) $gf_id = 'HOM05D000584' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000584' ) $data_identifier = 'HOM05D000584' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 23, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 11, 'fan' => (int) 33, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 29, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 8, 'egut' => (int) 12, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 14, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 10, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 12, 'ugi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427430' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ), 'gf_id' => 'HOM05D000584', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000584' ), 'data_identifier' => 'HOM05D000584', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ) $gf_id = 'HOM05D000584' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000584' ) $data_identifier = 'HOM05D000584' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 23, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 11, 'fan' => (int) 33, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 29, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 8, 'egut' => (int) 12, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 14, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 10, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 12, 'ugi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427430' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ), 'gf_id' => 'HOM05D000584', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000584' ), 'data_identifier' => 'HOM05D000584', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ) $gf_id = 'HOM05D000584' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000584' ) $data_identifier = 'HOM05D000584' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 23, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 11, 'fan' => (int) 33, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 29, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 8, 'egut' => (int) 12, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 14, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 10, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 12, 'ugi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427430' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ), 'gf_id' => 'HOM05D000584', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000584' ), 'data_identifier' => 'HOM05D000584', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ) $gf_id = 'HOM05D000584' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000584' ) $data_identifier = 'HOM05D000584' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 23, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 11, 'fan' => (int) 33, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 29, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 8, 'egut' => (int) 12, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 14, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 10, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 12, 'ugi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427430' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ), 'gf_id' => 'HOM05D000584', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000584' ), 'data_identifier' => 'HOM05D000584', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ) $gf_id = 'HOM05D000584' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000584' ) $data_identifier = 'HOM05D000584' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 23, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 11, 'fan' => (int) 33, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 29, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 8, 'egut' => (int) 12, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 14, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 10, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 12, 'ugi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427430' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ), 'gf_id' => 'HOM05D000584', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000584' ), 'data_identifier' => 'HOM05D000584', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ) $gf_id = 'HOM05D000584' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000584' ) $data_identifier = 'HOM05D000584' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 23, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 11, 'fan' => (int) 33, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 29, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 8, 'egut' => (int) 12, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 14, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 10, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 12, 'ugi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427430' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ), 'gf_id' => 'HOM05D000584', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000584' ), 'data_identifier' => 'HOM05D000584', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ) $gf_id = 'HOM05D000584' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000584' ) $data_identifier = 'HOM05D000584' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 23, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 11, 'fan' => (int) 33, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 29, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 8, 'egut' => (int) 12, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 14, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 10, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 12, 'ugi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427430' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ), 'gf_id' => 'HOM05D000584', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000584' ), 'data_identifier' => 'HOM05D000584', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ) $gf_id = 'HOM05D000584' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000584' ) $data_identifier = 'HOM05D000584' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 23, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 11, 'fan' => (int) 33, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 29, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 8, 'egut' => (int) 12, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 14, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 10, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 12, 'ugi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427430' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ), 'gf_id' => 'HOM05D000584', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000584' ), 'data_identifier' => 'HOM05D000584', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ) $gf_id = 'HOM05D000584' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000584' ) $data_identifier = 'HOM05D000584' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 23, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 11, 'fan' => (int) 33, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 29, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 8, 'egut' => (int) 12, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 14, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 10, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 12, 'ugi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427430' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ), 'gf_id' => 'HOM05D000584', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000584' ), 'data_identifier' => 'HOM05D000584', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ) $gf_id = 'HOM05D000584' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000584' ) $data_identifier = 'HOM05D000584' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 23, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 11, 'fan' => (int) 33, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 29, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 8, 'egut' => (int) 12, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 14, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 10, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 12, 'ugi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427430' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ), 'gf_id' => 'HOM05D000584', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000584' ), 'data_identifier' => 'HOM05D000584', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ) $gf_id = 'HOM05D000584' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000584' ) $data_identifier = 'HOM05D000584' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 23, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 11, 'fan' => (int) 33, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 29, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 8, 'egut' => (int) 12, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 14, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 10, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 12, 'ugi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427430' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ), 'gf_id' => 'HOM05D000584', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000584' ), 'data_identifier' => 'HOM05D000584', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ) $gf_id = 'HOM05D000584' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000584' ) $data_identifier = 'HOM05D000584' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 23, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 11, 'fan' => (int) 33, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 29, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 8, 'egut' => (int) 12, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 14, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 10, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 12, 'ugi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427430' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ), 'gf_id' => 'HOM05D000584', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000584' ), 'data_identifier' => 'HOM05D000584', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ) $gf_id = 'HOM05D000584' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000584' ) $data_identifier = 'HOM05D000584' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 23, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 11, 'fan' => (int) 33, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 29, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 8, 'egut' => (int) 12, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 14, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 10, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 12, 'ugi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427430' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ), 'gf_id' => 'HOM05D000584', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000584' ), 'data_identifier' => 'HOM05D000584', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ) $gf_id = 'HOM05D000584' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000584' ) $data_identifier = 'HOM05D000584' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 23, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 11, 'fan' => (int) 33, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 29, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 8, 'egut' => (int) 12, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 14, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 10, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 12, 'ugi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427430' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ), 'gf_id' => 'HOM05D000584', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000584' ), 'data_identifier' => 'HOM05D000584', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ) $gf_id = 'HOM05D000584' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000584' ) $data_identifier = 'HOM05D000584' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 23, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 11, 'fan' => (int) 33, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 29, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 8, 'egut' => (int) 12, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 14, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 10, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 12, 'ugi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427430' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ), 'gf_id' => 'HOM05D000584', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000584' ), 'data_identifier' => 'HOM05D000584', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ) $gf_id = 'HOM05D000584' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000584' ) $data_identifier = 'HOM05D000584' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 23, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 11, 'fan' => (int) 33, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 29, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 8, 'egut' => (int) 12, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 14, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 10, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 12, 'ugi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427430' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ), 'gf_id' => 'HOM05D000584', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000584' ), 'data_identifier' => 'HOM05D000584', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ) $gf_id = 'HOM05D000584' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000584' ) $data_identifier = 'HOM05D000584' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 23, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 11, 'fan' => (int) 33, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 29, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 8, 'egut' => (int) 12, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 14, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 10, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 12, 'ugi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427430' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ), 'gf_id' => 'HOM05D000584', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000584' ), 'data_identifier' => 'HOM05D000584', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ) $gf_id = 'HOM05D000584' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000584' ) $data_identifier = 'HOM05D000584' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 23, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 11, 'fan' => (int) 33, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 29, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 8, 'egut' => (int) 12, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 14, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 10, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 12, 'ugi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427430' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ), 'gf_id' => 'HOM05D000584', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000584' ), 'data_identifier' => 'HOM05D000584', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ) $gf_id = 'HOM05D000584' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000584' ) $data_identifier = 'HOM05D000584' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 23, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 11, 'fan' => (int) 33, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 29, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 8, 'egut' => (int) 12, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 14, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 10, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 12, 'ugi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427430' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ), 'gf_id' => 'HOM05D000584', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000584' ), 'data_identifier' => 'HOM05D000584', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ) $gf_id = 'HOM05D000584' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000584' ) $data_identifier = 'HOM05D000584' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 23, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 11, 'fan' => (int) 33, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 29, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 8, 'egut' => (int) 12, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 14, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 10, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 12, 'ugi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427430' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ), 'gf_id' => 'HOM05D000584', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000584' ), 'data_identifier' => 'HOM05D000584', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ) $gf_id = 'HOM05D000584' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000584' ) $data_identifier = 'HOM05D000584' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 23, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 11, 'fan' => (int) 33, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 29, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 8, 'egut' => (int) 12, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 14, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 10, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 12, 'ugi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427430' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ), 'gf_id' => 'HOM05D000584', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000584' ), 'data_identifier' => 'HOM05D000584', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ) $gf_id = 'HOM05D000584' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000584' ) $data_identifier = 'HOM05D000584' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 23, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 11, 'fan' => (int) 33, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 29, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 8, 'egut' => (int) 12, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 14, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 10, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 12, 'ugi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427430' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ), 'gf_id' => 'HOM05D000584', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000584' ), 'data_identifier' => 'HOM05D000584', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ) $gf_id = 'HOM05D000584' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000584' ) $data_identifier = 'HOM05D000584' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 23, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 11, 'fan' => (int) 33, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 29, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 8, 'egut' => (int) 12, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 14, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 10, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 12, 'ugi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427430' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ), 'gf_id' => 'HOM05D000584', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000584' ), 'data_identifier' => 'HOM05D000584', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ) $gf_id = 'HOM05D000584' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000584' ) $data_identifier = 'HOM05D000584' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 23, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 11, 'fan' => (int) 33, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 29, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 8, 'egut' => (int) 12, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 14, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 10, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 12, 'ugi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427430' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ), 'gf_id' => 'HOM05D000584', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000584' ), 'data_identifier' => 'HOM05D000584', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ) $gf_id = 'HOM05D000584' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000584' ) $data_identifier = 'HOM05D000584' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 23, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 11, 'fan' => (int) 33, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 29, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 8, 'egut' => (int) 12, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 14, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 10, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 12, 'ugi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427430' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ), 'gf_id' => 'HOM05D000584', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000584' ), 'data_identifier' => 'HOM05D000584', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ) $gf_id = 'HOM05D000584' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000584' ) $data_identifier = 'HOM05D000584' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 23, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 11, 'fan' => (int) 33, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 29, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 8, 'egut' => (int) 12, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 14, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 10, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 12, 'ugi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427430' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ), 'gf_id' => 'HOM05D000584', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000584' ), 'data_identifier' => 'HOM05D000584', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ) $gf_id = 'HOM05D000584' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000584' ) $data_identifier = 'HOM05D000584' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 23, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 11, 'fan' => (int) 33, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 29, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 8, 'egut' => (int) 12, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 14, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 10, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 12, 'ugi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427430' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ), 'gf_id' => 'HOM05D000584', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000584' ), 'data_identifier' => 'HOM05D000584', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ) $gf_id = 'HOM05D000584' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000584' ) $data_identifier = 'HOM05D000584' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 23, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 11, 'fan' => (int) 33, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 29, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 8, 'egut' => (int) 12, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 14, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 10, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 12, 'ugi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427430' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ), 'gf_id' => 'HOM05D000584', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000584' ), 'data_identifier' => 'HOM05D000584', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ) $gf_id = 'HOM05D000584' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000584' ) $data_identifier = 'HOM05D000584' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 23, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 11, 'fan' => (int) 33, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 29, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 8, 'egut' => (int) 12, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 14, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 10, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 12, 'ugi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427430' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ), 'gf_id' => 'HOM05D000584', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000584' ), 'data_identifier' => 'HOM05D000584', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ) $gf_id = 'HOM05D000584' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000584' ) $data_identifier = 'HOM05D000584' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 23, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 11, 'fan' => (int) 33, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 29, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 8, 'egut' => (int) 12, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 14, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 10, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 12, 'ugi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427430' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ), 'gf_id' => 'HOM05D000584', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000584' ), 'data_identifier' => 'HOM05D000584', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ) $gf_id = 'HOM05D000584' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000584' ) $data_identifier = 'HOM05D000584' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 23, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 11, 'fan' => (int) 33, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 29, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 8, 'egut' => (int) 12, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 14, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 10, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 12, 'ugi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427430' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ), 'gf_id' => 'HOM05D000584', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000584' ), 'data_identifier' => 'HOM05D000584', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ) $gf_id = 'HOM05D000584' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000584' ) $data_identifier = 'HOM05D000584' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 23, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 11, 'fan' => (int) 33, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 29, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 8, 'egut' => (int) 12, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 14, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 10, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 12, 'ugi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427430' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ), 'gf_id' => 'HOM05D000584', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000584' ), 'data_identifier' => 'HOM05D000584', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ) $gf_id = 'HOM05D000584' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000584' ) $data_identifier = 'HOM05D000584' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 23, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 11, 'fan' => (int) 33, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 29, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 8, 'egut' => (int) 12, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 14, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 10, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 12, 'ugi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427430' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ), 'gf_id' => 'HOM05D000584', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000584' ), 'data_identifier' => 'HOM05D000584', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ) $gf_id = 'HOM05D000584' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000584' ) $data_identifier = 'HOM05D000584' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 23, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 11, 'fan' => (int) 33, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 29, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 8, 'egut' => (int) 12, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 14, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 10, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 12, 'ugi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427430' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ), 'gf_id' => 'HOM05D000584', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000584' ), 'data_identifier' => 'HOM05D000584', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ) $gf_id = 'HOM05D000584' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000584' ) $data_identifier = 'HOM05D000584' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 23, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 11, 'fan' => (int) 33, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 29, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 8, 'egut' => (int) 12, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 14, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 10, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 12, 'ugi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427430' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ), 'gf_id' => 'HOM05D000584', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000584' ), 'data_identifier' => 'HOM05D000584', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ) $gf_id = 'HOM05D000584' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000584' ) $data_identifier = 'HOM05D000584' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 23, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 11, 'fan' => (int) 33, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 29, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 8, 'egut' => (int) 12, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 14, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 10, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 12, 'ugi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427430' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ), 'gf_id' => 'HOM05D000584', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000584' ), 'data_identifier' => 'HOM05D000584', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ) $gf_id = 'HOM05D000584' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000584' ) $data_identifier = 'HOM05D000584' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 23, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 11, 'fan' => (int) 33, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 29, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 8, 'egut' => (int) 12, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 14, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 10, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 12, 'ugi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427430' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ), 'gf_id' => 'HOM05D000584', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000584' ), 'data_identifier' => 'HOM05D000584', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ) $gf_id = 'HOM05D000584' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000584' ) $data_identifier = 'HOM05D000584' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 23, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 11, 'fan' => (int) 33, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 29, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 8, 'egut' => (int) 12, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 14, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 10, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 12, 'ugi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427430' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ), 'gf_id' => 'HOM05D000584', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000584' ), 'data_identifier' => 'HOM05D000584', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ) $gf_id = 'HOM05D000584' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000584' ) $data_identifier = 'HOM05D000584' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 23, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 11, 'fan' => (int) 33, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 29, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 8, 'egut' => (int) 12, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 14, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 10, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 12, 'ugi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427430' $species_info = array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ) $local_species = 'cre' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ), 'gf_id' => 'HOM05D000584', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000584' ), 'data_identifier' => 'HOM05D000584', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ) $gf_id = 'HOM05D000584' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000584' ) $data_identifier = 'HOM05D000584' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 23, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 11, 'fan' => (int) 33, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 29, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 8, 'egut' => (int) 12, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 14, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 10, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 12, 'ugi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427430' $species_info = array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ) $local_species = 'cre' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ), 'gf_id' => 'HOM05D000584', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000584' ), 'data_identifier' => 'HOM05D000584', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ) $gf_id = 'HOM05D000584' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000584' ) $data_identifier = 'HOM05D000584' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 23, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 11, 'fan' => (int) 33, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 29, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 8, 'egut' => (int) 12, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 14, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 10, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 12, 'ugi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427430' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ), 'gf_id' => 'HOM05D000584', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000584' ), 'data_identifier' => 'HOM05D000584', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ) $gf_id = 'HOM05D000584' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000584' ) $data_identifier = 'HOM05D000584' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 23, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 11, 'fan' => (int) 33, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 29, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 8, 'egut' => (int) 12, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 14, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 10, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 12, 'ugi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427430' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ), 'gf_id' => 'HOM05D000584', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000584' ), 'data_identifier' => 'HOM05D000584', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ) $gf_id = 'HOM05D000584' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000584' ) $data_identifier = 'HOM05D000584' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 23, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 11, 'fan' => (int) 33, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 29, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 8, 'egut' => (int) 12, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 14, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 10, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 12, 'ugi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427430' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ), 'gf_id' => 'HOM05D000584', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000584' ), 'data_identifier' => 'HOM05D000584', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ) $gf_id = 'HOM05D000584' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000584' ) $data_identifier = 'HOM05D000584' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 23, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 11, 'fan' => (int) 33, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 29, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 8, 'egut' => (int) 12, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 14, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 10, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 12, 'ugi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427430' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ), 'gf_id' => 'HOM05D000584', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000584' ), 'data_identifier' => 'HOM05D000584', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ) $gf_id = 'HOM05D000584' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000584' ) $data_identifier = 'HOM05D000584' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 23, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 11, 'fan' => (int) 33, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 29, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 8, 'egut' => (int) 12, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 14, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 10, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 12, 'ugi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427430' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ), 'gf_id' => 'HOM05D000584', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000584' ), 'data_identifier' => 'HOM05D000584', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ) $gf_id = 'HOM05D000584' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000584' ) $data_identifier = 'HOM05D000584' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 23, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 11, 'fan' => (int) 33, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 29, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 8, 'egut' => (int) 12, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 14, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 10, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 12, 'ugi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427430' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ), 'gf_id' => 'HOM05D000584', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000584' ), 'data_identifier' => 'HOM05D000584', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ) $gf_id = 'HOM05D000584' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000584' ) $data_identifier = 'HOM05D000584' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 23, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 11, 'fan' => (int) 33, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 29, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 8, 'egut' => (int) 12, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 14, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 10, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 12, 'ugi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427430' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ), 'gf_id' => 'HOM05D000584', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000584' ), 'data_identifier' => 'HOM05D000584', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ) $gf_id = 'HOM05D000584' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000584' ) $data_identifier = 'HOM05D000584' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 23, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 11, 'fan' => (int) 33, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 29, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 8, 'egut' => (int) 12, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 14, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 10, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 12, 'ugi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427430' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ), 'gf_id' => 'HOM05D000584', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000584' ), 'data_identifier' => 'HOM05D000584', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ) $gf_id = 'HOM05D000584' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000584' ) $data_identifier = 'HOM05D000584' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 23, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 11, 'fan' => (int) 33, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 29, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 8, 'egut' => (int) 12, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 14, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 10, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 12, 'ugi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427430' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ), 'gf_id' => 'HOM05D000584', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000584' ), 'data_identifier' => 'HOM05D000584', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ) $gf_id = 'HOM05D000584' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000584' ) $data_identifier = 'HOM05D000584' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 23, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 11, 'fan' => (int) 33, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 29, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 8, 'egut' => (int) 12, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 14, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 10, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 12, 'ugi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427430' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ), 'gf_id' => 'HOM05D000584', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000584' ), 'data_identifier' => 'HOM05D000584', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ) $gf_id = 'HOM05D000584' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000584' ) $data_identifier = 'HOM05D000584' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 23, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 11, 'fan' => (int) 33, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 29, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 8, 'egut' => (int) 12, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 14, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 10, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 12, 'ugi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427430' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ), 'gf_id' => 'HOM05D000584', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000584' ), 'data_identifier' => 'HOM05D000584', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ) $gf_id = 'HOM05D000584' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000584' ) $data_identifier = 'HOM05D000584' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 23, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 11, 'fan' => (int) 33, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 29, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 8, 'egut' => (int) 12, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 14, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 10, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 12, 'ugi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427430' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ), 'gf_id' => 'HOM05D000584', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000584' ), 'data_identifier' => 'HOM05D000584', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ) $gf_id = 'HOM05D000584' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000584' ) $data_identifier = 'HOM05D000584' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 23, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 11, 'fan' => (int) 33, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 29, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 8, 'egut' => (int) 12, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 14, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 10, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 12, 'ugi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427430' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ), 'gf_id' => 'HOM05D000584', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000584' ), 'data_identifier' => 'HOM05D000584', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ) $gf_id = 'HOM05D000584' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000584' ) $data_identifier = 'HOM05D000584' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 23, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 11, 'fan' => (int) 33, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 29, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 8, 'egut' => (int) 12, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 14, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 10, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 12, 'ugi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427430' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ), 'gf_id' => 'HOM05D000584', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000584' ), 'data_identifier' => 'HOM05D000584', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ) $gf_id = 'HOM05D000584' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000584' ) $data_identifier = 'HOM05D000584' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 23, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 11, 'fan' => (int) 33, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 29, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 8, 'egut' => (int) 12, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 14, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 10, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 12, 'ugi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427430' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ), 'gf_id' => 'HOM05D000584', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000584' ), 'data_identifier' => 'HOM05D000584', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ) $gf_id = 'HOM05D000584' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000584' ) $data_identifier = 'HOM05D000584' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 23, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 11, 'fan' => (int) 33, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 29, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 8, 'egut' => (int) 12, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 14, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 10, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 12, 'ugi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427430' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ), 'gf_id' => 'HOM05D000584', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000584' ), 'data_identifier' => 'HOM05D000584', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ) $gf_id = 'HOM05D000584' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000584' ) $data_identifier = 'HOM05D000584' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 23, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 11, 'fan' => (int) 33, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 29, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 8, 'egut' => (int) 12, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 14, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 10, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 12, 'ugi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427430' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ), 'gf_id' => 'HOM05D000584', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000584' ), 'data_identifier' => 'HOM05D000584', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ) $gf_id = 'HOM05D000584' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000584' ) $data_identifier = 'HOM05D000584' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 23, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 11, 'fan' => (int) 33, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 29, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 8, 'egut' => (int) 12, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 14, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 10, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 12, 'ugi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427430' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ), 'gf_id' => 'HOM05D000584', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000584' ), 'data_identifier' => 'HOM05D000584', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ) $gf_id = 'HOM05D000584' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000584' ) $data_identifier = 'HOM05D000584' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 23, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 11, 'fan' => (int) 33, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 29, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 8, 'egut' => (int) 12, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 14, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 10, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 12, 'ugi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427430' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ), 'gf_id' => 'HOM05D000584', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000584' ), 'data_identifier' => 'HOM05D000584', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ) $gf_id = 'HOM05D000584' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000584' ) $data_identifier = 'HOM05D000584' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 23, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 11, 'fan' => (int) 33, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 29, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 8, 'egut' => (int) 12, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 14, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 10, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 12, 'ugi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427430' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ), 'gf_id' => 'HOM05D000584', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000584' ), 'data_identifier' => 'HOM05D000584', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ) $gf_id = 'HOM05D000584' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000584' ) $data_identifier = 'HOM05D000584' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 23, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 11, 'fan' => (int) 33, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 29, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 8, 'egut' => (int) 12, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 14, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 10, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 12, 'ugi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427430' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ), 'gf_id' => 'HOM05D000584', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000584' ), 'data_identifier' => 'HOM05D000584', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ) $gf_id = 'HOM05D000584' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000584' ) $data_identifier = 'HOM05D000584' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 23, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 11, 'fan' => (int) 33, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 29, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 8, 'egut' => (int) 12, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 14, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 10, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 12, 'ugi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427430' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ), 'gf_id' => 'HOM05D000584', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000584' ), 'data_identifier' => 'HOM05D000584', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ) $gf_id = 'HOM05D000584' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000584' ) $data_identifier = 'HOM05D000584' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 23, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 11, 'fan' => (int) 33, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 29, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 8, 'egut' => (int) 12, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 14, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 10, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 12, 'ugi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427430' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ), 'gf_id' => 'HOM05D000584', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000584' ), 'data_identifier' => 'HOM05D000584', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ) $gf_id = 'HOM05D000584' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000584' ) $data_identifier = 'HOM05D000584' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 23, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 11, 'fan' => (int) 33, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 29, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 8, 'egut' => (int) 12, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 14, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 10, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 12, 'ugi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427430' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ), 'gf_id' => 'HOM05D000584', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000584' ), 'data_identifier' => 'HOM05D000584', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ) $gf_id = 'HOM05D000584' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000584' ) $data_identifier = 'HOM05D000584' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 23, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 11, 'fan' => (int) 33, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 29, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 8, 'egut' => (int) 12, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 14, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 10, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 12, 'ugi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427430' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ), 'gf_id' => 'HOM05D000584', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000584' ), 'data_identifier' => 'HOM05D000584', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ) $gf_id = 'HOM05D000584' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000584' ) $data_identifier = 'HOM05D000584' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 23, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 11, 'fan' => (int) 33, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 29, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 8, 'egut' => (int) 12, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 14, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 10, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 12, 'ugi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427430' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ), 'gf_id' => 'HOM05D000584', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000584' ), 'data_identifier' => 'HOM05D000584', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ) $gf_id = 'HOM05D000584' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000584' ) $data_identifier = 'HOM05D000584' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 23, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 11, 'fan' => (int) 33, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 29, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 8, 'egut' => (int) 12, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 14, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 10, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 12, 'ugi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427430' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ), 'gf_id' => 'HOM05D000584', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000584' ), 'data_identifier' => 'HOM05D000584', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ) $gf_id = 'HOM05D000584' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000584' ) $data_identifier = 'HOM05D000584' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 23, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 11, 'fan' => (int) 33, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 29, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 8, 'egut' => (int) 12, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 14, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 10, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 12, 'ugi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427430' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ), 'gf_id' => 'HOM05D000584', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000584' ), 'data_identifier' => 'HOM05D000584', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ) $gf_id = 'HOM05D000584' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000584' ) $data_identifier = 'HOM05D000584' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 23, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 11, 'fan' => (int) 33, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 29, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 8, 'egut' => (int) 12, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 14, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 10, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 12, 'ugi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427430' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ), 'gf_id' => 'HOM05D000584', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000584' ), 'data_identifier' => 'HOM05D000584', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ) $gf_id = 'HOM05D000584' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000584' ) $data_identifier = 'HOM05D000584' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 23, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 11, 'fan' => (int) 33, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 29, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 8, 'egut' => (int) 12, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 14, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 10, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 12, 'ugi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427430' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ), 'gf_id' => 'HOM05D000584', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000584' ), 'data_identifier' => 'HOM05D000584', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ) $gf_id = 'HOM05D000584' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000584' ) $data_identifier = 'HOM05D000584' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 23, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 11, 'fan' => (int) 33, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 29, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 8, 'egut' => (int) 12, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 14, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 10, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 12, 'ugi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427430' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ), 'gf_id' => 'HOM05D000584', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000584' ), 'data_identifier' => 'HOM05D000584', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ) $gf_id = 'HOM05D000584' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000584' ) $data_identifier = 'HOM05D000584' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 23, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 11, 'fan' => (int) 33, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 29, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 8, 'egut' => (int) 12, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 14, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 10, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 12, 'ugi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427430' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ), 'gf_id' => 'HOM05D000584', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000584' ), 'data_identifier' => 'HOM05D000584', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ) $gf_id = 'HOM05D000584' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000584' ) $data_identifier = 'HOM05D000584' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 23, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 11, 'fan' => (int) 33, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 29, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 8, 'egut' => (int) 12, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 14, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 10, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 12, 'ugi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427430' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ), 'gf_id' => 'HOM05D000584', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000584' ), 'data_identifier' => 'HOM05D000584', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ) $gf_id = 'HOM05D000584' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000584' ) $data_identifier = 'HOM05D000584' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 23, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 11, 'fan' => (int) 33, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 29, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 8, 'egut' => (int) 12, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 14, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 10, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 12, 'ugi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427430' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ), 'gf_id' => 'HOM05D000584', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000584' ), 'data_identifier' => 'HOM05D000584', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ) $gf_id = 'HOM05D000584' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000584' ) $data_identifier = 'HOM05D000584' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 23, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 11, 'fan' => (int) 33, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 29, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 8, 'egut' => (int) 12, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 14, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 10, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 12, 'ugi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427430' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ), 'gf_id' => 'HOM05D000584', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000584' ), 'data_identifier' => 'HOM05D000584', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ) $gf_id = 'HOM05D000584' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000584' ) $data_identifier = 'HOM05D000584' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 23, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 11, 'fan' => (int) 33, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 29, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 8, 'egut' => (int) 12, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 14, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 10, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 12, 'ugi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427430' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ), 'gf_id' => 'HOM05D000584', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000584' ), 'data_identifier' => 'HOM05D000584', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ) $gf_id = 'HOM05D000584' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000584' ) $data_identifier = 'HOM05D000584' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 23, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 11, 'fan' => (int) 33, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 29, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 8, 'egut' => (int) 12, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 14, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 10, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 12, 'ugi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427430' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ), 'gf_id' => 'HOM05D000584', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000584' ), 'data_identifier' => 'HOM05D000584', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ) $gf_id = 'HOM05D000584' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000584' ) $data_identifier = 'HOM05D000584' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 23, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 11, 'fan' => (int) 33, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 29, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 8, 'egut' => (int) 12, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 14, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 10, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 12, 'ugi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427430' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ), 'gf_id' => 'HOM05D000584', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000584' ), 'data_identifier' => 'HOM05D000584', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ) $gf_id = 'HOM05D000584' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000584' ) $data_identifier = 'HOM05D000584' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 23, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 11, 'fan' => (int) 33, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 29, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 8, 'egut' => (int) 12, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 14, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 10, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 12, 'ugi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427430' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ), 'gf_id' => 'HOM05D000584', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000584' ), 'data_identifier' => 'HOM05D000584', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ) $gf_id = 'HOM05D000584' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000584' ) $data_identifier = 'HOM05D000584' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 23, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 11, 'fan' => (int) 33, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 29, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 8, 'egut' => (int) 12, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 14, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 10, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 12, 'ugi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427430' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ), 'gf_id' => 'HOM05D000584', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000584' ), 'data_identifier' => 'HOM05D000584', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ) $gf_id = 'HOM05D000584' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000584' ) $data_identifier = 'HOM05D000584' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 23, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 11, 'fan' => (int) 33, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 29, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 8, 'egut' => (int) 12, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 14, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 10, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 12, 'ugi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427430' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ), 'gf_id' => 'HOM05D000584', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000584' ), 'data_identifier' => 'HOM05D000584', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ) $gf_id = 'HOM05D000584' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000584' ) $data_identifier = 'HOM05D000584' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 23, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 11, 'fan' => (int) 33, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 29, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 8, 'egut' => (int) 12, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 14, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 10, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 12, 'ugi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427430' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ), 'gf_id' => 'HOM05D000584', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000584' ), 'data_identifier' => 'HOM05D000584', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ) $gf_id = 'HOM05D000584' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000584' ) $data_identifier = 'HOM05D000584' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 23, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 11, 'fan' => (int) 33, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 29, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 8, 'egut' => (int) 12, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 14, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 10, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 12, 'ugi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427430' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ), 'gf_id' => 'HOM05D000584', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000584' ), 'data_identifier' => 'HOM05D000584', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ) $gf_id = 'HOM05D000584' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000584' ) $data_identifier = 'HOM05D000584' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 23, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 11, 'fan' => (int) 33, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 29, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 8, 'egut' => (int) 12, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 14, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 10, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 12, 'ugi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427430' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ), 'gf_id' => 'HOM05D000584', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000584' ), 'data_identifier' => 'HOM05D000584', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ) $gf_id = 'HOM05D000584' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000584' ) $data_identifier = 'HOM05D000584' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 23, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 11, 'fan' => (int) 33, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 29, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 8, 'egut' => (int) 12, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 14, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 10, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 12, 'ugi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427430' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ), 'gf_id' => 'HOM05D000584', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000584' ), 'data_identifier' => 'HOM05D000584', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ) $gf_id = 'HOM05D000584' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000584' ) $data_identifier = 'HOM05D000584' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 23, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 11, 'fan' => (int) 33, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 29, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 8, 'egut' => (int) 12, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 14, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 10, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 12, 'ugi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427430' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ), 'gf_id' => 'HOM05D000584', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000584' ), 'data_identifier' => 'HOM05D000584', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ) $gf_id = 'HOM05D000584' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000584' ) $data_identifier = 'HOM05D000584' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 23, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 11, 'fan' => (int) 33, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 29, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 8, 'egut' => (int) 12, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 14, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 10, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 12, 'ugi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427430' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ), 'gf_id' => 'HOM05D000584', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000584' ), 'data_identifier' => 'HOM05D000584', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ) $gf_id = 'HOM05D000584' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000584' ) $data_identifier = 'HOM05D000584' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 23, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 11, 'fan' => (int) 33, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 29, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 8, 'egut' => (int) 12, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 14, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 10, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 12, 'ugi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427430' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ), 'gf_id' => 'HOM05D000584', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000584' ), 'data_identifier' => 'HOM05D000584', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ) $gf_id = 'HOM05D000584' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000584' ) $data_identifier = 'HOM05D000584' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 23, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 11, 'fan' => (int) 33, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 29, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 8, 'egut' => (int) 12, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 14, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 10, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 12, 'ugi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427430' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ), 'gf_id' => 'HOM05D000584', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000584' ), 'data_identifier' => 'HOM05D000584', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ) $gf_id = 'HOM05D000584' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000584' ) $data_identifier = 'HOM05D000584' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 23, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 11, 'fan' => (int) 33, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 29, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 8, 'egut' => (int) 12, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 14, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 10, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 12, 'ugi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427430' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ), 'gf_id' => 'HOM05D000584', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000584' ), 'data_identifier' => 'HOM05D000584', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ) $gf_id = 'HOM05D000584' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000584' ) $data_identifier = 'HOM05D000584' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 23, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 11, 'fan' => (int) 33, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 29, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 8, 'egut' => (int) 12, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 14, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 10, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 12, 'ugi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427430' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ), 'gf_id' => 'HOM05D000584', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000584' ), 'data_identifier' => 'HOM05D000584', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ) $gf_id = 'HOM05D000584' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000584' ) $data_identifier = 'HOM05D000584' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 23, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 11, 'fan' => (int) 33, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 29, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 8, 'egut' => (int) 12, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 14, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 10, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 12, 'ugi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427430' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ), 'gf_id' => 'HOM05D000584', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000584' ), 'data_identifier' => 'HOM05D000584', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ) $gf_id = 'HOM05D000584' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000584' ) $data_identifier = 'HOM05D000584' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 23, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 11, 'fan' => (int) 33, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 29, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 8, 'egut' => (int) 12, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 14, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 10, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 12, 'ugi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427430' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ), 'gf_id' => 'HOM05D000584', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000584' ), 'data_identifier' => 'HOM05D000584', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ) $gf_id = 'HOM05D000584' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000584' ) $data_identifier = 'HOM05D000584' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 23, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 11, 'fan' => (int) 33, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 29, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 8, 'egut' => (int) 12, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 14, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 10, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 12, 'ugi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427430' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ), 'gf_id' => 'HOM05D000584', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000584' ), 'data_identifier' => 'HOM05D000584', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ) $gf_id = 'HOM05D000584' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000584' ) $data_identifier = 'HOM05D000584' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 23, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 11, 'fan' => (int) 33, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 29, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 8, 'egut' => (int) 12, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 14, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 10, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 12, 'ugi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427430' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ), 'gf_id' => 'HOM05D000584', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000584' ), 'data_identifier' => 'HOM05D000584', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ) $gf_id = 'HOM05D000584' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000584' ) $data_identifier = 'HOM05D000584' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 23, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 11, 'fan' => (int) 33, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 29, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 8, 'egut' => (int) 12, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 14, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 10, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 12, 'ugi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427430' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ), 'gf_id' => 'HOM05D000584', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000584' ), 'data_identifier' => 'HOM05D000584', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ) $gf_id = 'HOM05D000584' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000584' ) $data_identifier = 'HOM05D000584' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 23, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 11, 'fan' => (int) 33, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 29, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 8, 'egut' => (int) 12, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 14, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 10, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 12, 'ugi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427430' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ), 'gf_id' => 'HOM05D000584', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000584' ), 'data_identifier' => 'HOM05D000584', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ) $gf_id = 'HOM05D000584' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000584' ) $data_identifier = 'HOM05D000584' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 23, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 11, 'fan' => (int) 33, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 29, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 8, 'egut' => (int) 12, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 14, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 10, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 12, 'ugi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427430' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ), 'gf_id' => 'HOM05D000584', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000584' ), 'data_identifier' => 'HOM05D000584', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ) $gf_id = 'HOM05D000584' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000584' ) $data_identifier = 'HOM05D000584' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 23, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 11, 'fan' => (int) 33, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 29, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 8, 'egut' => (int) 12, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 14, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 10, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 12, 'ugi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427430' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ), 'gf_id' => 'HOM05D000584', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000584' ), 'data_identifier' => 'HOM05D000584', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ) $gf_id = 'HOM05D000584' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000584' ) $data_identifier = 'HOM05D000584' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 23, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 11, 'fan' => (int) 33, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 29, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 8, 'egut' => (int) 12, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 14, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 10, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 12, 'ugi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427430' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ), 'gf_id' => 'HOM05D000584', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000584' ), 'data_identifier' => 'HOM05D000584', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ) $gf_id = 'HOM05D000584' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000584' ) $data_identifier = 'HOM05D000584' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 23, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 11, 'fan' => (int) 33, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 29, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 8, 'egut' => (int) 12, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 14, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 10, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 12, 'ugi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427430' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ), 'gf_id' => 'HOM05D000584', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000584' ), 'data_identifier' => 'HOM05D000584', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ) $gf_id = 'HOM05D000584' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000584' ) $data_identifier = 'HOM05D000584' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 23, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 11, 'fan' => (int) 33, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 29, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 8, 'egut' => (int) 12, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 14, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 10, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 12, 'ugi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427430' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ), 'gf_id' => 'HOM05D000584', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000584' ), 'data_identifier' => 'HOM05D000584', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ) $gf_id = 'HOM05D000584' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000584' ) $data_identifier = 'HOM05D000584' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 23, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 11, 'fan' => (int) 33, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 29, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 8, 'egut' => (int) 12, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 14, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 10, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 12, 'ugi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427430' $species_info = array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ) $local_species = 'mco' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ), 'gf_id' => 'HOM05D000584', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000584' ), 'data_identifier' => 'HOM05D000584', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ) $gf_id = 'HOM05D000584' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000584' ) $data_identifier = 'HOM05D000584' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 23, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 11, 'fan' => (int) 33, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 29, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 8, 'egut' => (int) 12, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 14, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 10, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 12, 'ugi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427430' $species_info = array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ) $local_species = 'mco' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ), 'gf_id' => 'HOM05D000584', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000584' ), 'data_identifier' => 'HOM05D000584', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ) $gf_id = 'HOM05D000584' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000584' ) $data_identifier = 'HOM05D000584' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 23, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 11, 'fan' => (int) 33, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 29, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 8, 'egut' => (int) 12, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 14, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 10, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 12, 'ugi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427430' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ), 'gf_id' => 'HOM05D000584', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000584' ), 'data_identifier' => 'HOM05D000584', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ) $gf_id = 'HOM05D000584' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000584' ) $data_identifier = 'HOM05D000584' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 23, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 11, 'fan' => (int) 33, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 29, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 8, 'egut' => (int) 12, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 14, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 10, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 12, 'ugi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427430' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ), 'gf_id' => 'HOM05D000584', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000584' ), 'data_identifier' => 'HOM05D000584', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ) $gf_id = 'HOM05D000584' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000584' ) $data_identifier = 'HOM05D000584' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 23, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 11, 'fan' => (int) 33, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 29, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 8, 'egut' => (int) 12, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 14, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 10, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 12, 'ugi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427430' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ), 'gf_id' => 'HOM05D000584', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000584' ), 'data_identifier' => 'HOM05D000584', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ) $gf_id = 'HOM05D000584' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000584' ) $data_identifier = 'HOM05D000584' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 23, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 11, 'fan' => (int) 33, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 29, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 8, 'egut' => (int) 12, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 14, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 10, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 12, 'ugi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427430' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ), 'gf_id' => 'HOM05D000584', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000584' ), 'data_identifier' => 'HOM05D000584', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ) $gf_id = 'HOM05D000584' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000584' ) $data_identifier = 'HOM05D000584' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 23, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 11, 'fan' => (int) 33, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 29, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 8, 'egut' => (int) 12, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 14, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 10, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 12, 'ugi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427430' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ), 'gf_id' => 'HOM05D000584', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000584' ), 'data_identifier' => 'HOM05D000584', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ) $gf_id = 'HOM05D000584' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000584' ) $data_identifier = 'HOM05D000584' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 23, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 11, 'fan' => (int) 33, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 29, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 8, 'egut' => (int) 12, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 14, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 10, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 12, 'ugi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427430' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ), 'gf_id' => 'HOM05D000584', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000584' ), 'data_identifier' => 'HOM05D000584', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ) $gf_id = 'HOM05D000584' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000584' ) $data_identifier = 'HOM05D000584' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 23, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 11, 'fan' => (int) 33, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 29, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 8, 'egut' => (int) 12, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 14, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 10, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 12, 'ugi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427430' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ), 'gf_id' => 'HOM05D000584', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000584' ), 'data_identifier' => 'HOM05D000584', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ) $gf_id = 'HOM05D000584' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000584' ) $data_identifier = 'HOM05D000584' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 23, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 11, 'fan' => (int) 33, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 29, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 8, 'egut' => (int) 12, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 14, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 10, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 12, 'ugi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427430' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ), 'gf_id' => 'HOM05D000584', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000584' ), 'data_identifier' => 'HOM05D000584', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ) $gf_id = 'HOM05D000584' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000584' ) $data_identifier = 'HOM05D000584' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 23, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 11, 'fan' => (int) 33, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 29, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 8, 'egut' => (int) 12, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 14, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 10, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 12, 'ugi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427430' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ), 'gf_id' => 'HOM05D000584', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000584' ), 'data_identifier' => 'HOM05D000584', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ) $gf_id = 'HOM05D000584' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000584' ) $data_identifier = 'HOM05D000584' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 23, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 11, 'fan' => (int) 33, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 29, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 8, 'egut' => (int) 12, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 14, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 10, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 12, 'ugi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427430' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ), 'gf_id' => 'HOM05D000584', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000584' ), 'data_identifier' => 'HOM05D000584', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ) $gf_id = 'HOM05D000584' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000584' ) $data_identifier = 'HOM05D000584' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 23, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 11, 'fan' => (int) 33, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 29, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 8, 'egut' => (int) 12, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 14, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 10, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 12, 'ugi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427430' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ), 'gf_id' => 'HOM05D000584', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000584' ), 'data_identifier' => 'HOM05D000584', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ) $gf_id = 'HOM05D000584' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000584' ) $data_identifier = 'HOM05D000584' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 23, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 11, 'fan' => (int) 33, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 29, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 8, 'egut' => (int) 12, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 14, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 10, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 12, 'ugi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427430' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ), 'gf_id' => 'HOM05D000584', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000584' ), 'data_identifier' => 'HOM05D000584', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ) $gf_id = 'HOM05D000584' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000584' ) $data_identifier = 'HOM05D000584' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 23, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 11, 'fan' => (int) 33, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 29, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 8, 'egut' => (int) 12, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 14, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 10, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 12, 'ugi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427430' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ), 'gf_id' => 'HOM05D000584', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000584' ), 'data_identifier' => 'HOM05D000584', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ) $gf_id = 'HOM05D000584' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000584' ) $data_identifier = 'HOM05D000584' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 23, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 11, 'fan' => (int) 33, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 29, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 8, 'egut' => (int) 12, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 14, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 10, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 12, 'ugi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427430' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ), 'gf_id' => 'HOM05D000584', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000584' ), 'data_identifier' => 'HOM05D000584', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ) $gf_id = 'HOM05D000584' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000584' ) $data_identifier = 'HOM05D000584' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 23, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 11, 'fan' => (int) 33, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 29, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 8, 'egut' => (int) 12, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 14, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 10, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 12, 'ugi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427430' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ), 'gf_id' => 'HOM05D000584', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000584' ), 'data_identifier' => 'HOM05D000584', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ) $gf_id = 'HOM05D000584' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000584' ) $data_identifier = 'HOM05D000584' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 23, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 11, 'fan' => (int) 33, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 29, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 8, 'egut' => (int) 12, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 14, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 10, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 12, 'ugi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427430' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ), 'gf_id' => 'HOM05D000584', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000584' ), 'data_identifier' => 'HOM05D000584', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ) $gf_id = 'HOM05D000584' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000584' ) $data_identifier = 'HOM05D000584' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 23, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 11, 'fan' => (int) 33, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 29, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 8, 'egut' => (int) 12, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 14, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 10, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 12, 'ugi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427430' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ), 'gf_id' => 'HOM05D000584', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000584' ), 'data_identifier' => 'HOM05D000584', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ) $gf_id = 'HOM05D000584' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000584' ) $data_identifier = 'HOM05D000584' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 23, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 11, 'fan' => (int) 33, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 29, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 8, 'egut' => (int) 12, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 14, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 10, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 12, 'ugi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427430' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ), 'gf_id' => 'HOM05D000584', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000584' ), 'data_identifier' => 'HOM05D000584', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ) $gf_id = 'HOM05D000584' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000584' ) $data_identifier = 'HOM05D000584' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 23, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 11, 'fan' => (int) 33, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 29, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 8, 'egut' => (int) 12, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 14, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 10, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 12, 'ugi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427430' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ), 'gf_id' => 'HOM05D000584', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000584' ), 'data_identifier' => 'HOM05D000584', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ) $gf_id = 'HOM05D000584' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000584' ) $data_identifier = 'HOM05D000584' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 23, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 11, 'fan' => (int) 33, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 29, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 8, 'egut' => (int) 12, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 14, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 10, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 12, 'ugi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427430' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ), 'gf_id' => 'HOM05D000584', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000584' ), 'data_identifier' => 'HOM05D000584', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ) $gf_id = 'HOM05D000584' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000584' ) $data_identifier = 'HOM05D000584' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 23, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 11, 'fan' => (int) 33, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 29, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 8, 'egut' => (int) 12, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 14, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 10, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 12, 'ugi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427430' $species_info = array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ) $local_species = 'pco' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ), 'gf_id' => 'HOM05D000584', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000584' ), 'data_identifier' => 'HOM05D000584', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ) $gf_id = 'HOM05D000584' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000584' ) $data_identifier = 'HOM05D000584' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 23, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 11, 'fan' => (int) 33, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 29, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 8, 'egut' => (int) 12, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 14, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 10, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 12, 'ugi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427430' $species_info = array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ) $local_species = 'pco' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ), 'gf_id' => 'HOM05D000584', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000584' ), 'data_identifier' => 'HOM05D000584', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ) $gf_id = 'HOM05D000584' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000584' ) $data_identifier = 'HOM05D000584' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 23, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 11, 'fan' => (int) 33, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 29, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 8, 'egut' => (int) 12, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 14, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 10, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 12, 'ugi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427430' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ), 'gf_id' => 'HOM05D000584', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000584' ), 'data_identifier' => 'HOM05D000584', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ) $gf_id = 'HOM05D000584' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000584' ) $data_identifier = 'HOM05D000584' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 23, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 11, 'fan' => (int) 33, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 29, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 8, 'egut' => (int) 12, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 14, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 10, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 12, 'ugi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427430' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ), 'gf_id' => 'HOM05D000584', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000584' ), 'data_identifier' => 'HOM05D000584', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ) $gf_id = 'HOM05D000584' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000584' ) $data_identifier = 'HOM05D000584' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 23, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 11, 'fan' => (int) 33, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 29, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 8, 'egut' => (int) 12, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 14, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 10, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 12, 'ugi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427430' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ), 'gf_id' => 'HOM05D000584', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000584' ), 'data_identifier' => 'HOM05D000584', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ) $gf_id = 'HOM05D000584' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000584' ) $data_identifier = 'HOM05D000584' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 23, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 11, 'fan' => (int) 33, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 29, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 8, 'egut' => (int) 12, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 14, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 10, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 12, 'ugi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427430' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ), 'gf_id' => 'HOM05D000584', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000584' ), 'data_identifier' => 'HOM05D000584', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ) $gf_id = 'HOM05D000584' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000584' ) $data_identifier = 'HOM05D000584' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 23, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 11, 'fan' => (int) 33, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 29, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 8, 'egut' => (int) 12, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 14, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 10, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 12, 'ugi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427430' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ), 'gf_id' => 'HOM05D000584', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000584' ), 'data_identifier' => 'HOM05D000584', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ) $gf_id = 'HOM05D000584' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000584' ) $data_identifier = 'HOM05D000584' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 23, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 11, 'fan' => (int) 33, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 29, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 8, 'egut' => (int) 12, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 14, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 10, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 12, 'ugi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427430' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ), 'gf_id' => 'HOM05D000584', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000584' ), 'data_identifier' => 'HOM05D000584', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ) $gf_id = 'HOM05D000584' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000584' ) $data_identifier = 'HOM05D000584' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 23, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 11, 'fan' => (int) 33, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 29, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 8, 'egut' => (int) 12, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 14, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 10, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 12, 'ugi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427430' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ), 'gf_id' => 'HOM05D000584', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000584' ), 'data_identifier' => 'HOM05D000584', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ) $gf_id = 'HOM05D000584' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000584' ) $data_identifier = 'HOM05D000584' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 23, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 11, 'fan' => (int) 33, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 29, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 8, 'egut' => (int) 12, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 14, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 10, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 12, 'ugi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427430' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ), 'gf_id' => 'HOM05D000584', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000584' ), 'data_identifier' => 'HOM05D000584', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ) $gf_id = 'HOM05D000584' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000584' ) $data_identifier = 'HOM05D000584' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 23, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 11, 'fan' => (int) 33, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 29, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 8, 'egut' => (int) 12, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 14, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 10, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 12, 'ugi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427430' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ), 'gf_id' => 'HOM05D000584', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000584' ), 'data_identifier' => 'HOM05D000584', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ) $gf_id = 'HOM05D000584' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000584' ) $data_identifier = 'HOM05D000584' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 23, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 11, 'fan' => (int) 33, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 29, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 8, 'egut' => (int) 12, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 14, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 10, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 12, 'ugi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427430' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ), 'gf_id' => 'HOM05D000584', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000584' ), 'data_identifier' => 'HOM05D000584', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ) $gf_id = 'HOM05D000584' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000584' ) $data_identifier = 'HOM05D000584' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 23, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 11, 'fan' => (int) 33, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 29, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 8, 'egut' => (int) 12, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 14, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 10, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 12, 'ugi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427430' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ), 'gf_id' => 'HOM05D000584', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000584' ), 'data_identifier' => 'HOM05D000584', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ) $gf_id = 'HOM05D000584' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000584' ) $data_identifier = 'HOM05D000584' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 23, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 11, 'fan' => (int) 33, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 29, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 8, 'egut' => (int) 12, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 14, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 10, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 12, 'ugi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427430' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ), 'gf_id' => 'HOM05D000584', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000584' ), 'data_identifier' => 'HOM05D000584', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ) $gf_id = 'HOM05D000584' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000584' ) $data_identifier = 'HOM05D000584' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 23, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 11, 'fan' => (int) 33, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 29, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 8, 'egut' => (int) 12, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 14, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 10, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 12, 'ugi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427430' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ), 'gf_id' => 'HOM05D000584', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000584' ), 'data_identifier' => 'HOM05D000584', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ) $gf_id = 'HOM05D000584' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000584' ) $data_identifier = 'HOM05D000584' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 23, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 11, 'fan' => (int) 33, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 29, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 8, 'egut' => (int) 12, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 14, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 10, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 12, 'ugi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427430' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ), 'gf_id' => 'HOM05D000584', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000584' ), 'data_identifier' => 'HOM05D000584', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ) $gf_id = 'HOM05D000584' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000584' ) $data_identifier = 'HOM05D000584' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 23, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 11, 'fan' => (int) 33, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 29, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 8, 'egut' => (int) 12, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 14, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 10, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 12, 'ugi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427430' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ), 'gf_id' => 'HOM05D000584', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000584' ), 'data_identifier' => 'HOM05D000584', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ) $gf_id = 'HOM05D000584' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000584' ) $data_identifier = 'HOM05D000584' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 23, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 11, 'fan' => (int) 33, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 29, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 8, 'egut' => (int) 12, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 14, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 10, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 12, 'ugi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427430' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ), 'gf_id' => 'HOM05D000584', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000584' ), 'data_identifier' => 'HOM05D000584', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ) $gf_id = 'HOM05D000584' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000584' ) $data_identifier = 'HOM05D000584' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 23, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 11, 'fan' => (int) 33, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 29, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 8, 'egut' => (int) 12, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 14, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 10, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 12, 'ugi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427430' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ), 'gf_id' => 'HOM05D000584', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000584' ), 'data_identifier' => 'HOM05D000584', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ) $gf_id = 'HOM05D000584' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000584' ) $data_identifier = 'HOM05D000584' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 23, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 11, 'fan' => (int) 33, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 29, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 8, 'egut' => (int) 12, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 14, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 10, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 12, 'ugi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427430' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ), 'gf_id' => 'HOM05D000584', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000584' ), 'data_identifier' => 'HOM05D000584', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ) $gf_id = 'HOM05D000584' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000584' ) $data_identifier = 'HOM05D000584' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 23, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 11, 'fan' => (int) 33, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 29, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 8, 'egut' => (int) 12, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 14, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 10, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 12, 'ugi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427430' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ), 'gf_id' => 'HOM05D000584', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000584' ), 'data_identifier' => 'HOM05D000584', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ) $gf_id = 'HOM05D000584' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000584' ) $data_identifier = 'HOM05D000584' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 23, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 11, 'fan' => (int) 33, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 29, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 8, 'egut' => (int) 12, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 14, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 10, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 12, 'ugi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427430' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ), 'gf_id' => 'HOM05D000584', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000584' ), 'data_identifier' => 'HOM05D000584', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ) $gf_id = 'HOM05D000584' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000584' ) $data_identifier = 'HOM05D000584' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 23, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 11, 'fan' => (int) 33, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 29, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 8, 'egut' => (int) 12, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 14, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 10, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 12, 'ugi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427430' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ), 'gf_id' => 'HOM05D000584', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000584' ), 'data_identifier' => 'HOM05D000584', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ) $gf_id = 'HOM05D000584' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000584' ) $data_identifier = 'HOM05D000584' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 23, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 11, 'fan' => (int) 33, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 29, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 8, 'egut' => (int) 12, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 14, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 10, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 12, 'ugi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427430' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ), 'gf_id' => 'HOM05D000584', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000584' ), 'data_identifier' => 'HOM05D000584', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ) $gf_id = 'HOM05D000584' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000584' ) $data_identifier = 'HOM05D000584' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 23, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 11, 'fan' => (int) 33, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 29, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 8, 'egut' => (int) 12, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 14, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 10, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 12, 'ugi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427430' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ), 'gf_id' => 'HOM05D000584', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000584' ), 'data_identifier' => 'HOM05D000584', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ) $gf_id = 'HOM05D000584' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000584' ) $data_identifier = 'HOM05D000584' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 23, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 11, 'fan' => (int) 33, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 29, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 8, 'egut' => (int) 12, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 14, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 10, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 12, 'ugi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427430' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ), 'gf_id' => 'HOM05D000584', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000584' ), 'data_identifier' => 'HOM05D000584', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ) $gf_id = 'HOM05D000584' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000584' ) $data_identifier = 'HOM05D000584' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 23, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 11, 'fan' => (int) 33, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 29, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 8, 'egut' => (int) 12, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 14, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 10, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 12, 'ugi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427430' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ), 'gf_id' => 'HOM05D000584', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000584' ), 'data_identifier' => 'HOM05D000584', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ) $gf_id = 'HOM05D000584' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000584' ) $data_identifier = 'HOM05D000584' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 23, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 11, 'fan' => (int) 33, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 29, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 8, 'egut' => (int) 12, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 14, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 10, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 12, 'ugi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427430' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ), 'gf_id' => 'HOM05D000584', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000584' ), 'data_identifier' => 'HOM05D000584', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ) $gf_id = 'HOM05D000584' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000584' ) $data_identifier = 'HOM05D000584' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 23, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 11, 'fan' => (int) 33, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 29, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 8, 'egut' => (int) 12, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 14, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 10, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 12, 'ugi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427430' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ), 'gf_id' => 'HOM05D000584', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000584' ), 'data_identifier' => 'HOM05D000584', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ) $gf_id = 'HOM05D000584' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000584' ) $data_identifier = 'HOM05D000584' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 23, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 11, 'fan' => (int) 33, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 29, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 8, 'egut' => (int) 12, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 14, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 10, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 12, 'ugi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427430' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ), 'gf_id' => 'HOM05D000584', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000584' ), 'data_identifier' => 'HOM05D000584', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ) $gf_id = 'HOM05D000584' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000584' ) $data_identifier = 'HOM05D000584' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 23, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 11, 'fan' => (int) 33, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 29, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 8, 'egut' => (int) 12, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 14, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 10, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 12, 'ugi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427430' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ), 'gf_id' => 'HOM05D000584', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000584' ), 'data_identifier' => 'HOM05D000584', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ) $gf_id = 'HOM05D000584' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000584' ) $data_identifier = 'HOM05D000584' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 23, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 11, 'fan' => (int) 33, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 29, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 8, 'egut' => (int) 12, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 14, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 10, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 12, 'ugi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427430' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ), 'gf_id' => 'HOM05D000584', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000584' ), 'data_identifier' => 'HOM05D000584', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ) $gf_id = 'HOM05D000584' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000584' ) $data_identifier = 'HOM05D000584' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 23, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 11, 'fan' => (int) 33, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 29, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 8, 'egut' => (int) 12, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 14, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 10, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 12, 'ugi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427430' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ), 'gf_id' => 'HOM05D000584', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000584' ), 'data_identifier' => 'HOM05D000584', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ) $gf_id = 'HOM05D000584' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000584' ) $data_identifier = 'HOM05D000584' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 23, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 11, 'fan' => (int) 33, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 29, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 8, 'egut' => (int) 12, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 14, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 10, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 12, 'ugi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427430' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ), 'gf_id' => 'HOM05D000584', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000584' ), 'data_identifier' => 'HOM05D000584', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ) $gf_id = 'HOM05D000584' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000584' ) $data_identifier = 'HOM05D000584' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 23, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 11, 'fan' => (int) 33, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 29, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 8, 'egut' => (int) 12, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 14, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 10, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 12, 'ugi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427430' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ), 'gf_id' => 'HOM05D000584', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000584' ), 'data_identifier' => 'HOM05D000584', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ) $gf_id = 'HOM05D000584' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000584' ) $data_identifier = 'HOM05D000584' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 23, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 11, 'fan' => (int) 33, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 29, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 8, 'egut' => (int) 12, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 14, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 10, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 12, 'ugi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427430' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ), 'gf_id' => 'HOM05D000584', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000584' ), 'data_identifier' => 'HOM05D000584', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ) $gf_id = 'HOM05D000584' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000584' ) $data_identifier = 'HOM05D000584' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 23, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 11, 'fan' => (int) 33, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 29, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 8, 'egut' => (int) 12, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 14, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 10, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 12, 'ugi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427430' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ), 'gf_id' => 'HOM05D000584', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000584' ), 'data_identifier' => 'HOM05D000584', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ) $gf_id = 'HOM05D000584' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000584' ) $data_identifier = 'HOM05D000584' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 23, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 11, 'fan' => (int) 33, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 29, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 8, 'egut' => (int) 12, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 14, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 10, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 12, 'ugi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427430' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ), 'gf_id' => 'HOM05D000584', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000584' ), 'data_identifier' => 'HOM05D000584', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ) $gf_id = 'HOM05D000584' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000584' ) $data_identifier = 'HOM05D000584' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 23, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 11, 'fan' => (int) 33, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 29, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 8, 'egut' => (int) 12, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 14, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 10, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 12, 'ugi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427430' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ), 'gf_id' => 'HOM05D000584', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000584' ), 'data_identifier' => 'HOM05D000584', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ) $gf_id = 'HOM05D000584' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000584' ) $data_identifier = 'HOM05D000584' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 23, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 11, 'fan' => (int) 33, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 29, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 8, 'egut' => (int) 12, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 14, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 10, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 12, 'ugi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427430' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ), 'gf_id' => 'HOM05D000584', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000584' ), 'data_identifier' => 'HOM05D000584', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ) $gf_id = 'HOM05D000584' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000584' ) $data_identifier = 'HOM05D000584' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 23, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 11, 'fan' => (int) 33, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 29, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 8, 'egut' => (int) 12, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 14, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 10, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 12, 'ugi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427430' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ), 'gf_id' => 'HOM05D000584', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000584' ), 'data_identifier' => 'HOM05D000584', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ) $gf_id = 'HOM05D000584' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000584' ) $data_identifier = 'HOM05D000584' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 23, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 11, 'fan' => (int) 33, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 29, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 8, 'egut' => (int) 12, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 14, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 10, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 12, 'ugi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427430' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ), 'gf_id' => 'HOM05D000584', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000584' ), 'data_identifier' => 'HOM05D000584', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ) $gf_id = 'HOM05D000584' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000584' ) $data_identifier = 'HOM05D000584' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 23, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 11, 'fan' => (int) 33, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 29, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 8, 'egut' => (int) 12, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 14, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 10, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 12, 'ugi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427430' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ), 'gf_id' => 'HOM05D000584', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000584' ), 'data_identifier' => 'HOM05D000584', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ) $gf_id = 'HOM05D000584' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000584' ) $data_identifier = 'HOM05D000584' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 23, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 11, 'fan' => (int) 33, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 29, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 8, 'egut' => (int) 12, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 14, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 10, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 12, 'ugi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427430' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ), 'gf_id' => 'HOM05D000584', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000584' ), 'data_identifier' => 'HOM05D000584', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ) $gf_id = 'HOM05D000584' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000584' ) $data_identifier = 'HOM05D000584' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 23, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 11, 'fan' => (int) 33, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 29, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 8, 'egut' => (int) 12, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 14, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 10, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 12, 'ugi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427430' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ), 'gf_id' => 'HOM05D000584', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000584' ), 'data_identifier' => 'HOM05D000584', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ) $gf_id = 'HOM05D000584' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000584' ) $data_identifier = 'HOM05D000584' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 23, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 11, 'fan' => (int) 33, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 29, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 8, 'egut' => (int) 12, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 14, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 10, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 12, 'ugi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427430' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ), 'gf_id' => 'HOM05D000584', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000584' ), 'data_identifier' => 'HOM05D000584', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ) $gf_id = 'HOM05D000584' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000584' ) $data_identifier = 'HOM05D000584' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 23, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 11, 'fan' => (int) 33, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 29, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 8, 'egut' => (int) 12, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 14, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 10, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 12, 'ugi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427430' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ), 'gf_id' => 'HOM05D000584', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000584' ), 'data_identifier' => 'HOM05D000584', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ) $gf_id = 'HOM05D000584' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000584' ) $data_identifier = 'HOM05D000584' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 23, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 11, 'fan' => (int) 33, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 29, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 8, 'egut' => (int) 12, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 14, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 10, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 12, 'ugi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427430' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ), 'gf_id' => 'HOM05D000584', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000584' ), 'data_identifier' => 'HOM05D000584', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ) $gf_id = 'HOM05D000584' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000584' ) $data_identifier = 'HOM05D000584' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 23, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 11, 'fan' => (int) 33, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 29, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 8, 'egut' => (int) 12, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 14, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 10, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 12, 'ugi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427430' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ), 'gf_id' => 'HOM05D000584', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000584' ), 'data_identifier' => 'HOM05D000584', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ) $gf_id = 'HOM05D000584' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000584' ) $data_identifier = 'HOM05D000584' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 23, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 11, 'fan' => (int) 33, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 29, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 8, 'egut' => (int) 12, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 14, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 10, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 12, 'ugi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427430' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ), 'gf_id' => 'HOM05D000584', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000584' ), 'data_identifier' => 'HOM05D000584', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ) $gf_id = 'HOM05D000584' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000584' ) $data_identifier = 'HOM05D000584' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 23, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 11, 'fan' => (int) 33, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 29, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 8, 'egut' => (int) 12, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 14, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 10, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 12, 'ugi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427430' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ), 'gf_id' => 'HOM05D000584', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000584' ), 'data_identifier' => 'HOM05D000584', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ) $gf_id = 'HOM05D000584' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000584' ) $data_identifier = 'HOM05D000584' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 23, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 11, 'fan' => (int) 33, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 29, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 8, 'egut' => (int) 12, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 14, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 10, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 12, 'ugi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427430' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ), 'gf_id' => 'HOM05D000584', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000584' ), 'data_identifier' => 'HOM05D000584', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ) $gf_id = 'HOM05D000584' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000584' ) $data_identifier = 'HOM05D000584' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 23, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 11, 'fan' => (int) 33, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 29, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 8, 'egut' => (int) 12, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 14, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 10, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 12, 'ugi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427430' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ), 'gf_id' => 'HOM05D000584', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000584' ), 'data_identifier' => 'HOM05D000584', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ) $gf_id = 'HOM05D000584' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000584' ) $data_identifier = 'HOM05D000584' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 23, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 11, 'fan' => (int) 33, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 29, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 8, 'egut' => (int) 12, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 14, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 10, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 12, 'ugi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427430' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ), 'gf_id' => 'HOM05D000584', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000584' ), 'data_identifier' => 'HOM05D000584', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ) $gf_id = 'HOM05D000584' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000584' ) $data_identifier = 'HOM05D000584' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 23, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 11, 'fan' => (int) 33, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 29, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 8, 'egut' => (int) 12, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 14, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 10, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 12, 'ugi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427430' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ), 'gf_id' => 'HOM05D000584', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000584' ), 'data_identifier' => 'HOM05D000584', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ) $gf_id = 'HOM05D000584' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000584' ) $data_identifier = 'HOM05D000584' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 23, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 11, 'fan' => (int) 33, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 29, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 8, 'egut' => (int) 12, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 14, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 10, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 12, 'ugi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427430' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ), 'gf_id' => 'HOM05D000584', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000584' ), 'data_identifier' => 'HOM05D000584', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ) $gf_id = 'HOM05D000584' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000584' ) $data_identifier = 'HOM05D000584' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 23, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 11, 'fan' => (int) 33, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 29, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 8, 'egut' => (int) 12, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 14, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 10, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 12, 'ugi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427430' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ), 'gf_id' => 'HOM05D000584', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000584' ), 'data_identifier' => 'HOM05D000584', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000584', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '950', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28610' => 'bna', 'A02p30920' => 'bna', 'A03p25040' => 'bna', 'A03p32230' => 'bna', 'A04p01550' => 'bna', 'A04p33650' => 'bna', 'A06p05720' => 'bna', 'A06p45230' => 'bna', 'A07p23820' => 'bna', 'A07p25180' => 'bna', 'A08p34940' => 'bna', 'A09p22900' => 'bna', 'A09p52820' => 'bna', 'A09p65760' => 'bna', 'Aa31LG10G14880' => 'aar', 'Aa31LG5G200' => 'aar', 'Aa31LG6G310' => 'aar', 'Aa31sc198G30' => 'aar', 'Aa31sc735G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.530' => 'aag', 'Actinidia00054' => 'ach', 'Actinidia01053' => 'ach', 'Actinidia02129' => 'ach', 'Actinidia02130' => 'ach', 'Actinidia05747' => 'ach', 'Actinidia10858' => 'ach', 'Actinidia12184' => 'ach', 'Actinidia12192' => 'ach', 'Actinidia12679' => 'ach', 'Actinidia14436' => 'ach', 'Actinidia18725' => 'ach', 'Actinidia19819' => 'ach', 'Actinidia19820' => 'ach', 'Actinidia22818' => 'ach', 'Actinidia24696' => 'ach', 'Actinidia25903' => 'ach', 'Actinidia27725' => 'ach', 'Actinidia28319' => 'ach', 'Actinidia30907' => 'ach', 'Actinidia31499' => 'ach', 'Actinidia31781' => 'ach', 'Actinidia33478' => 'ach', 'Actinidia36932' => 'ach', 'Ah.02g116740' => 'amhyb', 'Ah.06g192910' => 'amhyb', 'Ah.07g199050' => 'amhyb', 'Ah.07g199060' => 'amhyb', 'Ah.12g056790' => 'amhyb', 'Ah.13g066880' => 'amhyb', 'AL1G19250' => 'aly', 'AL4G13870' => 'aly', 'AL4G13880' => 'aly', 'AL4G44250' => 'aly', 'AL5G42910' => 'aly', 'AL6G53330' => 'aly', 'AL8G10850' => 'aly', 'Aqoxy2G03125' => 'aox', 'Aqoxy3G02696' => 'aox', 'Aqoxy5G00620' => 'aox', 'Aqoxy5G03890' => 'aox', 'Aqoxy7G00733' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2BC2K1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JA4PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.748FVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81UYA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E46NXI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9ZPA8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXUC2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5XN66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRKT77' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LZ43DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N80N6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXR65D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3XHSV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5Y2Y6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NVVR' => 'arhy', 'AT1G08820' => 'ath', 'AT1G51270' => 'ath', 'AT2G23830' => 'ath', 'AT2G45140' => 'ath', 'AT3G60600' => 'ath', 'AT4G00170' => 'ath', 'AT5G47180' => 'ath', 'ATR0317G111' => 'atr', 'ATR0665G365' => 'atr', 'ATR0706G057' => 'atr', 'ATR1153G073' => 'atr', 'ATR1153G115' => 'atr', 'Atru.chr2.633' => 'acertr', 'Atru.chr4.2747' => 'acertr', 'Atru.chr5.251' => 'acertr', 'Atru.chr5.263' => 'acertr', 'Atru.chr9.1226' => 'acertr', 'Atru.chr9.1325' => 'acertr', 'AUR62000933' => 'cqu', 'AUR62002196' => 'cqu', 'AUR62004166' => 'cqu', 'AUR62004170' => 'cqu', 'AUR62005036' => 'cqu', 'AUR62007153' => 'cqu', 'AUR62007510' => 'cqu', 'AUR62013663' => 'cqu', 'AUR62013669' => 'cqu', 'AUR62015514' => 'cqu', 'AUR62018858' => 'cqu', 'AUR62039963' => 'cqu', 'BcaB01g02172' => 'bca', 'BcaB01g03289' => 'bca', 'BcaB02g07403' => 'bca', 'BcaB02g07556' => 'bca', 'BcaB07g30789' => 'bca', 'BcaC01g05156' => 'bca', 'BcaC01g06885' => 'bca', 'BcaC02g10163' => 'bca', 'BcaC03g16948' => 'bca', 'BcaC04g21642' => 'bca', 'BcaC05g24741' => 'bca', 'BcaC05g24742' => 'bca', 'BcaC06g31410' => 'bca', 'BcaC06g34279' => 'bca', 'BcaC07g40581' => 'bca', 'BcaC07g41925' => 'bca', 'BcaC07g41926' => 'bca', 'BcaC08g44888' => 'bca', 'BolC2t10885H' => 'bol', 'BolC3t15335H' => 'bol', 'BolC3t16198H' => 'bol', 'BolC4t24759H' => 'bol', 'BolC4t28648H' => 'bol', 'BolC5t29448H' => 'bol', 'BolC6t37660H' => 'bol', 'BolC7t43628H' => 'bol', 'BolC8t47618H' => 'bol', 'BolC8t48872H' => 'bol', 'BolC8t52510H' => 'bol', 'BolC9t55811H' => 'bol', 'BraA01t03042Z' => 'bra', 'BraA02t08104Z' => 'bra', 'BraA03t12393Z' => 'bra', 'BraA04t15876Z' => 'bra', 'BraA04t18829Z' => 'bra', 'BraA06t23782Z' => 'bra', 'BraA06t27393Z' => 'bra', 'BraA07t30035Z' => 'bra', 'BraA07t30160Z' => 'bra', 'BraA08t35405Z' => 'bra', 'BraA09t37891Z' => 'bra', 'BraA09t38686Z' => 'bra', 'BraA09t38698Z' => 'bra', 'BraA09t38705Z' => 'bra', 'BraA09t40714Z' => 'bra', 'BraA09t41919Z' => 'bra', 'C02p48530' => 'bna', 'C03p29880' => 'bna', 'C03p39270' => 'bna', 'C04p32060' => 'bna', 'C04p71410' => 'bna', 'C05p06910' => 'bna', 'C06p25030' => 'bna', 'C07p30870' => 'bna', 'C08p12310' => 'bna', 'C08p35560' => 'bna', 'C08p49830' => 'bna', 'C09p29470' => 'bna', 'CAN.G1227.13' => 'can', 'CAN.G134.211' => 'can', 'CAN.G1469.6' => 'can', 'CAN.G1748.1' => 'can', 'CAN.G1872.9' => 'can', 'CAN.G223.6' => 'can', 'CAN.G330.8' => 'can', 'CAN.G511.11' => 'can', 'CAN.G761.20' => 'can', 'CAN.G845.18' => 'can', 'CANSAT21G0412' => 'cansat', 'CANSAT21G2228' => 'cansat', 'CANSAT54G2586' => 'cansat', 'CANSAT56G1286' => 'cansat', 'CANSAT56G1416' => 'cansat', 'CANSAT56G3964' => 'cansat', 'CANSAT78G1702' => 'cansat', 'CARHR008740' => 'chi', 'CARHR140370' => 'chi', 'CARHR170980' => 'chi', 'CARHR170990' => 'chi', 'CARHR171020' => 'chi', 'CARHR174180' => 'chi', 'CARHR248200' => 'chi', 'Carub.0001s0816' => 'cru', 'Carub.0004s2775' => 'cru', 'Carub.0005s2734' => 'cru', 'Carub.0006s3705' => 'cru', 'Carub.0008s0056' => 'cru', 'Ca_19838_v3' => 'car', 'Ca_21551_v3' => 'car', 'Ca_21960_v3' => 'car', 'Ca_22006_v3' => 'car', 'Ca_24571_v3' => 'car', 'Ca_24607_v3' => 'car', 'CBR_g37873' => 'cbr', 'Cc02_g24350' => 'ccan', 'Cc02_g24420' => 'ccan', 'Cc02_g32240' => 'ccan', 'Cc03_g02420' => 'ccan', 'Cc08_g11480' => 'ccan', 'Cc08_g12530' => 'ccan', 'Cc08_g12540' => 'ccan', 'CDE02G0610' => 'cde', 'CDE04G1928' => 'cde', 'CDE06G1660' => 'cde', 'CDE08G0963' => 'cde', 'CDE09G0449' => 'cde', 'CDE11G0012' => 'cde', 'CDE11G1061' => 'cde', 'Cfa011167' => 'cfa', 'Cfa011184' => 'cfa', 'Cfa012670' => 'cfa', 'Cfa015239' => 'cfa', 'Cfa015500' => 'cfa', 'Cfa021154' => 'cfa', 'Ciclev10001215m.g' => 'ccl', 'Ciclev10005219m.g' => 'ccl', 'Ciclev10021928m.g' => 'ccl', 'Ciclev10021939m.g' => 'ccl', 'Ciclev10021988m.g' => 'ccl', 'Ciclev10022085m.g' => 'ccl', 'CiPaw.01G153700' => 'cil', 'CiPaw.07G011300' => 'cil', 'CiPaw.11G069500' => 'cil', 'CiPaw.11G153500' => 'cil', 'CiPaw.12G047400' => 'cil', 'CiPaw.12G109300' => 'cil', 'CiPaw.13G032500' => 'cil', 'CiPaw.13G033500' => 'cil', 'CiPaw.14G025700' => 'cil', 'CiPaw.14G026300' => 'cil', 'ClCG01G004010' => 'cla', 'ClCG02G016230' => 'cla', 'ClCG03G016500' => 'cla', 'ClCG03G016510' => 'cla', 'ClCG03G016540' => 'cla', 'ClCG06G003120' => 'cla', 'ClCG10G002310' => 'cla', 'COL.COLO4_06569' => 'col', 'COL.COLO4_12489' => 'col', 'COL.COLO4_12506' => 'col', 'COL.COLO4_13936' => 'col', 'COL.COLO4_21686' => 'col', 'COL.COLO4_25186' => 'col', 'COL.COLO4_36034' => 'col', 'COL.COLO4_37188' => 'col', 'Cpa.g.sc117.27' => 'cpa', 'Cpa.g.sc16.108' => 'cpa', 'Cpa.g.sc29.147' => 'cpa', 'Cpa.g.sc49.150' => 'cpa', 'Cpa.g.sc49.151' => 'cpa', 'Cpa.g.sc49.163' => 'cpa', 'Cpa.g.sc89.4' => 'cpa', 'Cre03.g196900' => 'cre', 'CsaV3_1G039440' => 'csa', 'CsaV3_1G039480' => 'csa', 'CsaV3_2G004540' => 'csa', 'CsaV3_3G002350' => 'csa', 'CsaV3_3G014090' => 'csa', 'CsaV3_5G004190' => 'csa', 'CsaV3_6G009220' => 'csa', 'CSS0006707' => 'camsi', 'CSS0006717' => 'camsi', 'CSS0008589' => 'camsi', 'CSS0013442' => 'camsi', 'CSS0018433' => 'camsi', 'CSS0018994' => 'camsi', 'CSS0020170' => 'camsi', 'CSS0020349' => 'camsi', 'CSS0022429' => 'camsi', 'CSS0023310' => 'camsi', 'CSS0025630' => 'camsi', 'CSS0030506' => 'camsi', 'DCAR_000652' => 'dca', 'DCAR_003292' => 'dca', 'DCAR_004593' => 'dca', 'DCAR_004949' => 'dca', 'DCAR_005579' => 'dca', 'DCAR_006828' => 'dca', 'DCAR_009442' => 'dca', 'DCAR_012737' => 'dca', 'DCAR_024763' => 'dca', 'DCAR_025099' => 'dca', 'DCAR_031514' => 'dca', 'Dinv01340' => 'din', 'Dinv04279' => 'din', 'Dinv21691' => 'din', 'Dinv28575' => 'din', 'Dinv28864' => 'din', 'Dinv39140' => 'din', 'Dinv43673' => 'din', 'Dinv43679' => 'din', 'Dinv44118' => 'din', 'Dinv44130' => 'din', 'Dinv44431' => 'din', 'Duzib068G0052' => 'dzi', 'Duzib068G0204' => 'dzi', 'Duzib084G0542' => 'dzi', 'Duzib084G0648' => 'dzi', 'Duzib084G1125' => 'dzi', 'Duzib106G2015' => 'dzi', 'Duzib133G1332' => 'dzi', 'Duzib133G1495' => 'dzi', 'Duzib138G0606' => 'dzi', 'Duzib138G1806' => 'dzi', 'Duzib151G0992' => 'dzi', 'Duzib177G1203' => 'dzi', 'Duzib205G0488' => 'dzi', 'Duzib205G1914' => 'dzi', 'Duzib205G2027' => 'dzi', 'Duzib268G0486' => 'dzi', 'Duzib268G1103' => 'dzi', 'ECA005G0001' => 'eca', 'ECA233G0676' => 'eca', 'ECA233G2870' => 'eca', 'ECA236G1362' => 'eca', 'ECA236G2723' => 'eca', 'ECA236G4444' => 'eca', 'ECA236G5044' => 'eca', 'ECA238G2540' => 'eca', 'ECA240G4631' => 'eca', 'ECA246G0550' => 'eca', 'ECA246G1467' => 'eca', 'EL10Ac1g00577' => 'bvu', 'EL10Ac1g00839' => 'bvu', 'EL10Ac1g00842' => 'bvu', 'EL10Ac3g05839' => 'bvu', 'EL10Ac5g12287' => 'bvu', 'EL10Ac5g13075' => 'bvu', 'Eucgr.D02126' => 'egr', 'Eucgr.D02475' => 'egr', 'Eucgr.D02491' => 'egr', 'Eucgr.E00367' => 'egr', 'Eucgr.E00432' => 'egr', 'Eucgr.H03764' => 'egr', 'Eucgr.H04422' => 'egr', 'Eucgr.H04423' => 'egr', 'Eucgr.J03162' => 'egr', 'Eucgr.L01455' => 'egr', 'Eucgr.L01457' => 'egr', 'FAN01G2067' => 'fan', 'FAN01G2905' => 'fan', 'FAN02G2105' => 'fan', 'FAN03G0976' => 'fan', 'FAN03G3141' => 'fan', 'FAN04G1097' => 'fan', 'FAN04G2559' => 'fan', 'FAN05G1691' => 'fan', 'FAN05G4587' => 'fan', 'FAN06G0611' => 'fan', 'FAN06G3879' => 'fan', 'FAN06G4164' => 'fan', 'FAN06G4991' => 'fan', 'FAN07G1424' => 'fan', 'FAN07G2899' => 'fan', 'FAN08G0530' => 'fan', 'FAN08G0803' => 'fan', 'FAN09G1749' => 'fan', 'FAN09G2479' => 'fan', 'FAN10G1225' => 'fan', 'FAN10G1856' => 'fan', 'FAN10G2781' => 'fan', 'FAN10G3823' => 'fan', 'FAN10G4208' => 'fan', 'FAN12G0086' => 'fan', 'FAN12G2416' => 'fan', 'FAN13G0828' => 'fan', 'FAN13G2958' => 'fan', 'FAN14G1726' => 'fan', 'FAN17G2906' => 'fan', 'FAN18G0850' => 'fan', 'FAN18G2358' => 'fan', 'FAN22G2037' => 'fan', 'FvH4_4g17100' => 'fve', 'FvH4_5g18750' => 'fve', 'FvH4_5g20180' => 'fve', 'FvH4_6g04180' => 'fve', 'FvH4_7g11090' => 'fve', 'FvH4_7g11210' => 'fve', 'Glyma.01G136000' => 'gma', 'Glyma.01G205300' => 'gma', 'Glyma.01G210100' => 'gma', 'Glyma.03G032100' => 'gma', 'Glyma.05G058700' => 'gma', 'Glyma.05G064600' => 'gma', 'Glyma.07G252000' => 'gma', 'Glyma.10G158400' => 'gma', 'Glyma.11G032000' => 'gma', 'Glyma.11G037600' => 'gma', 'Glyma.13G214700' => 'gma', 'Glyma.15G098400' => 'gma', 'Glyma.17G022400' => 'gma', 'Glyma.17G141100' => 'gma', 'Glyma.17G146400' => 'gma', 'Glyma.20G230200' => 'gma', 'Gohir.A03G004900' => 'ghi', 'Gohir.A03G008600' => 'ghi', 'Gohir.A08G030200' => 'ghi', 'Gohir.A08G165600' => 'ghi', 'Gohir.A09G196100' => 'ghi', 'Gohir.A09G196900' => 'ghi', 'Gohir.A10G101715' => 'ghi', 'Gohir.A11G026600' => 'ghi', 'Gohir.A11G078800' => 'ghi', 'Gohir.A11G237600' => 'ghi', 'Gohir.A12G094800' => 'ghi', 'Gohir.A12G101000' => 'ghi', 'Gohir.A12G217500' => 'ghi', 'Gohir.A13G166300' => 'ghi', 'Gohir.D03G162300' => 'ghi', 'Gohir.D03G167700' => 'ghi', 'Gohir.D08G041100' => 'ghi', 'Gohir.D08G157500' => 'ghi', 'Gohir.D08G184400' => 'ghi', 'Gohir.D09G190700' => 'ghi', 'Gohir.D09G191500' => 'ghi', 'Gohir.D10G166200' => 'ghi', 'Gohir.D11G025900' => 'ghi', 'Gohir.D11G083400' => 'ghi', 'Gohir.D11G248100' => 'ghi', 'Gohir.D12G097500' => 'ghi', 'Gohir.D12G103800' => 'ghi', 'Gohir.D12G220000' => 'ghi', 'Gohir.D13G169200' => 'ghi', 'Gorai.003G170900' => 'gra', 'Gorai.003G177400' => 'gra', 'Gorai.004G040100' => 'gra', 'Gorai.004G163800' => 'gra', 'Gorai.004G193700' => 'gra', 'Gorai.006G213500' => 'gra', 'Gorai.006G214300' => 'gra', 'Gorai.007G028100' => 'gra', 'Gorai.007G089000' => 'gra', 'Gorai.007G264400' => 'gra', 'Gorai.008G106200' => 'gra', 'Gorai.008G113000' => 'gra', 'Gorai.008G235700' => 'gra', 'Gorai.011G185500' => 'gra', 'Gorai.013G192700' => 'gra', 'GSVIVG01001317001' => 'vvi', 'GSVIVG01017816001' => 'vvi', 'GSVIVG01021970001' => 'vvi', 'GSVIVG01027643001' => 'vvi', 'GSVIVG01027683001' => 'vvi', 'HanXRQChr03g0088601' => 'han', 'HanXRQChr03g0089831' => 'han', 'HanXRQChr03g0093251' => 'han', 'HanXRQChr06g0169071' => 'han', 'HanXRQChr06g0169601' => 'han', 'HanXRQChr07g0189711' => 'han', 'HanXRQChr10g0280131' => 'han', 'HanXRQChr12g0379611' => 'han', 'HanXRQChr13g0395661' => 'han', 'HanXRQChr13g0417481' => 'han', 'HanXRQChr13g0423081' => 'han', 'HanXRQChr14g0445501' => 'han', 'HanXRQChr16g0511591' => 'han', 'HanXRQChr17g0539231' => 'han', 'HanXRQChr17g0539261' => 'han', 'Haze_01052' => 'cav', 'Haze_02666' => 'cav', 'Haze_02680' => 'cav', 'Haze_04285' => 'cav', 'Haze_07926' => 'cav', 'Haze_07977' => 'cav', 'Hma1.2p1_0301F.1_g118300' => 'hma', 'Hma1.2p1_0332F.1_g127956' => 'hma', 'Hma1.2p1_0332F.1_g127970' => 'hma', 'Hma1.2p1_0823F.1_g224570' => 'hma', 'Hma1.2p1_0840F.1_g226500' => 'hma', 'Hma1.2p1_1636F.1_g294840' => 'hma', 'Hma1.2p1_1786F.1_g302350' => 'hma', 'Hma1.2p1_2238F.1_g317790' => 'hma', 'HPP92_000380' => 'vpl', 'HPP92_020678' => 'vpl', 'HPP92_022317' => 'vpl', 'HPP92_022325' => 'vpl', 'HPP92_025469' => 'vpl', 'HPP92_025864' => 'vpl', 'Hund07011' => 'sun', 'Hund11325' => 'sun', 'Hund11594' => 'sun', 'Hund11824' => 'sun', 'Hund14532' => 'sun', 'Hund16017' => 'sun', 'Hund17043' => 'sun', 'Hund20610' => 'sun', 'Lalb_Chr02g0148521' => 'lal', 'Lalb_Chr03g0039821' => 'lal', 'Lalb_Chr05g0214241' => 'lal', 'Lalb_Chr05g0214511' => 'lal', 'Lalb_Chr05g0221291' => 'lal', 'Lalb_Chr06g0167881' => 'lal', 'Lalb_Chr07g0177561' => 'lal', 'Lalb_Chr07g0190231' => 'lal', 'Lalb_Chr09g0324211' => 'lal', 'Lalb_Chr09g0330141' => 'lal', 'Lalb_Chr13g0303881' => 'lal', 'Lalb_Chr16g0379381' => 'lal', 'Lalb_Chr16g0379631' => 'lal', 'Lalb_Chr16g0386641' => 'lal', 'Lj1A980T23' => 'lonja', 'Lj2A216T55' => 'lonja', 'Lj2A227T57' => 'lonja', 'Lj2g0012729' => 'lja', 'Lj2g0016903' => 'lja', 'Lj2g0017414' => 'lja', 'Lj2g0025727' => 'lja', 'Lj3g0022173' => 'lja', 'Lj4g0000605' => 'lja', 'Lj5g0025674' => 'lja', 'Lj7A534T34' => 'lonja', 'Lj7C535T9' => 'lonja', 'Lj8A275T72' => 'lonja', 'Lj8C262T2' => 'lonja', 'Lj9A565T42' => 'lonja', 'Lj9A675T38' => 'lonja', 'LjContig00389g0018630' => 'lja', 'LjContig00389g0024259' => 'lja', 'Lsat_1_v5_gn_2_66381' => 'lsa', 'Lsat_1_v5_gn_3_129161' => 'lsa', 'Lsat_1_v5_gn_3_26601' => 'lsa', 'Lsat_1_v5_gn_3_501' => 'lsa', 'Lsat_1_v5_gn_4_69081' => 'lsa', 'Lsat_1_v5_gn_4_69101' => 'lsa', 'Lsat_1_v5_gn_5_37741' => 'lsa', 'Lsat_1_v5_gn_6_17840' => 'lsa', 'Lsat_1_v5_gn_6_70661' => 'lsa', 'Lsat_1_v5_gn_6_79720' => 'lsa', 'Lsat_1_v5_gn_6_91200' => 'lsa', 'Lsat_1_v5_gn_6_94140' => 'lsa', 'Lsat_1_v5_gn_7_8961' => 'lsa', 'Lsat_1_v5_gn_7_9220' => 'lsa', 'Manes.01G079800' => 'mes', 'Manes.01G087200' => 'mes', 'Manes.01G268500' => 'mes', 'Manes.02G038900' => 'mes', 'Manes.02G044100' => 'mes', 'Manes.05G048300' => 'mes', 'Manes.05G048900' => 'mes', 'Manes.08G125700' => 'mes', 'Manes.09G160000' => 'mes', 'Manes.15G017600' => 'mes', 'Mapoly0022s0097' => 'mpo', 'MBI04_g09481_MAGBIO' => 'mbi', 'MBI04_g28361_MAGBIO' => 'mbi', 'MBI04_g37594_MAGBIO' => 'mbi', 'MBI16_g10434_MAGBIO' => 'mbi', 'MBI19_g04669_MAGBIO' => 'mbi', 'MCO07G217' => 'mco', 'MD00G1043700' => 'mdo', 'MD00G1052100' => 'mdo', 'MD02G1209600' => 'mdo', 'MD02G1210500' => 'mdo', 'MD04G1051600' => 'mdo', 'MD06G1048500' => 'mdo', 'MD06G1060200' => 'mdo', 'MD07G1115600' => 'mdo', 'MD07G1116700' => 'mdo', 'MD12G1230200' => 'mdo', 'MD13G1174400' => 'mdo', 'MD16G1175900' => 'mdo', 'Medtr0135s0080' => 'mtr', 'Medtr0753s0030' => 'mtr', 'Medtr1g081950' => 'mtr', 'Medtr4g026540' => 'mtr', 'Medtr4g026600' => 'mtr', 'Medtr4g026620' => 'mtr', 'Medtr4g026650' => 'mtr', 'Medtr4g026780' => 'mtr', 'Medtr4g026830' => 'mtr', 'Medtr4g027050' => 'mtr', 'Medtr4g099440' => 'mtr', 'Medtr4g101020' => 'mtr', 'Medtr4g118760' => 'mtr', 'Medtr5g012420' => 'mtr', 'Medtr5g013320' => 'mtr', 'MELO3C004337.2' => 'cme', 'MELO3C005536.2' => 'cme', 'MELO3C006603.2' => 'cme', 'MELO3C013905.2' => 'cme', 'MELO3C015369.2' => 'cme', 'MELO3C015371.2' => 'cme', 'MELO3C021149.2' => 'cme', 'MELO3C022883.2' => 'cme', 'Migut.A00969' => 'egut', 'Migut.A00974' => 'egut', 'Migut.A00982' => 'egut', 'Migut.B01595' => 'egut', 'Migut.B01604' => 'egut', 'Migut.E00960' => 'egut', 'Migut.E01663' => 'egut', 'Migut.G00216' => 'egut', 'Migut.N00474' => 'egut', 'Migut.N00475' => 'egut', 'Migut.N00476' => 'egut', 'Migut.N01614' => 'egut', 'MSTRG.10049' => 'ama', 'MSTRG.12092' => 'ama', 'MSTRG.12093' => 'ama', 'MSTRG.12094' => 'ama', 'MSTRG.13779' => 'ama', 'MSTRG.17160' => 'ama', 'MSTRG.28179' => 'ama', 'MSTRG.4911' => 'ama', 'Nitab4.5_0000185g0180' => 'nta', 'Nitab4.5_0000245g0120' => 'nta', 'Nitab4.5_0000262g0120' => 'nta', 'Nitab4.5_0000448g0100' => 'nta', 'Nitab4.5_0000475g0050' => 'nta', 'Nitab4.5_0000500g0130' => 'nta', 'Nitab4.5_0000500g0140' => 'nta', 'Nitab4.5_0000700g0030' => 'nta', 'Nitab4.5_0000712g0250' => 'nta', 'Nitab4.5_0000859g0220' => 'nta', 'Nitab4.5_0000859g0310' => 'nta', 'Nitab4.5_0002225g0100' => 'nta', 'Nitab4.5_0003067g0050' => 'nta', 'Nitab4.5_0004740g0020' => 'nta', 'Nitab4.5_0006445g0030' => 'nta', 'Nitab4.5_0006594g0070' => 'nta', 'Nitab4.5_0007628g0050' => 'nta', 'Nitab4.5_0008963g0040' => 'nta', 'Nitab4.5_0011984g0030' => 'nta', 'Nn1g00811' => 'nnu', 'Nn1g01024' => 'nnu', 'Nn1g01066' => 'nnu', 'Nn3g21290' => 'nnu', 'Nn4g26040' => 'nnu', 'Nn6g33793' => 'nnu', 'Nn6g33977' => 'nnu', 'Nn6g34020' => 'nnu', 'Nn7g38149' => 'nnu', 'Oeu000019.1' => 'oeu', 'Oeu011909.1' => 'oeu', 'Oeu017024.1' => 'oeu', 'Oeu017033.2' => 'oeu', 'Oeu017212.1' => 'oeu', 'Oeu019595.1' => 'oeu', 'Oeu026204.1' => 'oeu', 'Oeu026205.1' => 'oeu', 'Oeu032093.1' => 'oeu', 'Oeu046407.1' => 'oeu', 'Oeu051922.1' => 'oeu', 'Oeu052166.1' => 'oeu', 'Oeu062971.1' => 'oeu', 'Os01g0936800' => 'osa', 'Os02g0643000' => 'osa', 'Os02g0652550' => 'osa', 'Os02g0661900' => 'osa', 'Os04g0369000' => 'osa', 'Os04g0534400' => 'osa', 'Os04g0554200' => 'osa', 'Os05g0373000' => 'osa', 'Os08g0155100' => 'osa', 'Os08g0156700' => 'osa', 'Os10g0161625' => 'osa', 'Os10g0507600' => 'osa', 'Os10g0549100' => 'osa', 'Os11g0274100' => 'osa', 'Peaxi162Scf00102g00850' => 'pax', 'Peaxi162Scf00102g01144' => 'pax', 'Peaxi162Scf00225g00522' => 'pax', 'Peaxi162Scf00304g01344' => 'pax', 'Peaxi162Scf00386g00110' => 'pax', 'Peaxi162Scf00446g00211' => 'pax', 'Peaxi162Scf00623g00009' => 'pax', 'Peaxi162Scf00803g00115' => 'pax', 'Peaxi162Scf01243g00019' => 'pax', 'PGR004G0065' => 'pgr', 'PGR004G1137' => 'pgr', 'PGR015G0001' => 'pgr', 'PGR031G0039' => 'pgr', 'PGR031G3928' => 'pgr', 'PGR042G3849' => 'pgr', 'PGR104G0001' => 'pgr', 'PGSC0003DMG400010653' => 'stu', 'PGSC0003DMG400020490' => 'stu', 'PGSC0003DMG400021592' => 'stu', 'PGSC0003DMG400026015' => 'stu', 'PGSC0003DMG400026252' => 'stu', 'PGSC0003DMG401012477' => 'stu', 'PGSC0003DMG401025971' => 'stu', 'PGSC0003DMG402022455' => 'stu', 'PGSC0003DMG402025971' => 'stu', 'PGSC0003DMG402029877' => 'stu', 'Phvul.002G001300' => 'pvu', 'Phvul.002G062400' => 'pvu', 'Phvul.003G100500' => 'pvu', 'Phvul.003G220000' => 'pvu', 'Phvul.006G160900' => 'pvu', 'Phvul.007G183900' => 'pvu', 'Phvul.010G072400' => 'pvu', 'Potri.001G152000' => 'ptr', 'Potri.001G152100' => 'ptr', 'Potri.002G144000' => 'ptr', 'Potri.002G144800' => 'ptr', 'Potri.003G076100' => 'ptr', 'Potri.003G082500' => 'ptr', 'Potri.005G044900' => 'ptr', 'Potri.010G031601' => 'ptr', 'Potri.013G031400' => 'ptr', 'Potri.014G060900' => 'ptr', 'Pp3c20_18330' => 'ppa', 'Pp3c23_8610' => 'ppa', 'Pp3c24_5010' => 'ppa', 'PRCOL_00004054' => 'pco', 'Prupe.1G142800' => 'ppe', 'Prupe.2G138100' => 'ppe', 'Prupe.2G139900' => 'ppe', 'Prupe.5G058700' => 'ppe', 'Prupe.5G071100' => 'ppe', 'Prupe.6G335400' => 'ppe', 'Prupe.6G335500' => 'ppe', 'Psat0s1985g0040' => 'psa', 'Psat2g176120' => 'psa', 'Psat3g161440' => 'psa', 'Psat4g029400' => 'psa', 'Psat4g071760' => 'psa', 'Psat4g075080' => 'psa', 'Psat6g148240' => 'psa', 'Psat7g236080' => 'psa', 'Psat7g236120' => 'psa', 'PSO017G5833' => 'pso', 'PSO063G3156' => 'pso', 'PSO063G4473' => 'pso', 'PSO063G7654' => 'pso', 'PSO170G4319' => 'pso', 'PSO170G4558' => 'pso', 'PSO210G2116' => 'pso', 'PSO210G2571' => 'pso', 'PSO421G0108' => 'pso', 'PSO541G3339' => 'pso', 'PSO675G2736' => 'pso', 'PSO675G5995' => 'pso', 'PSO675G6303' => 'pso', 'PSO675G7184' => 'pso', 'PSO782G2537' => 'pso', 'PSO782G2791' => 'pso', 'PSO832G0492' => 'pso', 'QL03p000984' => 'qlo', 'QL04p038709' => 'qlo', 'QL04p039248' => 'qlo', 'QL06p007280' => 'qlo', 'QL12p009073' => 'qlo', 'QL12p012379' => 'qlo', 'RcHm_v2.0_Chr0c30g0501241' => 'rch', 'RcHm_v2.0_Chr0c30g0501251' => 'rch', 'RcHm_v2.0_Chr1g0349111' => 'rch', 'RcHm_v2.0_Chr1g0349311' => 'rch', 'RcHm_v2.0_Chr2g0099851' => 'rch', 'RcHm_v2.0_Chr2g0117201' => 'rch', 'RcHm_v2.0_Chr3g0452761' => 'rch', 'RcHm_v2.0_Chr3g0452781' => 'rch', 'RcHm_v2.0_Chr4g0420891' => 'rch', 'RcHm_v2.0_Chr6g0272641' => 'rch', 'RcHm_v2.0_Chr7g0203091' => 'rch', 'RcHm_v2.0_Chr7g0205261' => 'rch', 'RcHm_v2.0_Chr7g0205271' => 'rch', 'Rhsim01G0149900' => 'rsi', 'Rhsim01G0151000' => 'rsi', 'Rhsim02G0014000' => 'rsi', 'Rhsim07G0031200' => 'rsi', 'Rhsim07G0118200' => 'rsi', 'Rhsim07G0176500' => 'rsi', 'Rhsim09G0191300' => 'rsi', 'Rhsim11G0000200' => 'rsi', 'Sabra01G0121700' => 'sbr', 'Sabra01G0121800' => 'sbr', 'Sabra01G0121900' => 'sbr', 'Sabra02G0112700' => 'sbr', 'Sabra03G0046500' => 'sbr', 'Sabra03G0053200' => 'sbr', 'Sabra05G0041600' => 'sbr', 'Sabra13G0030500' => 'sbr', 'Sabra14G0043500' => 'sbr', 'Sabra14G0044700' => 'sbr', 'SalBow2G1008' => 'sbo', 'SalBow5G3708' => 'sbo', 'SalBow5G4897' => 'sbo', 'SalBow5G5281' => 'sbo', 'SalBow6G6363' => 'sbo', 'SalBow6G6790' => 'sbo', 'Sc01g0008090' => 'sci', 'Sc01g0008500' => 'sci', 'Sc01g0008510' => 'sci', 'Sc02g0002750' => 'sci', 'Sc07g0009310' => 'sci', 'Sc09g0003480' => 'sci', 'Sc13g0003640' => 'sci', 'Sc16g0008220' => 'sci', 'Sc22g0000830' => 'sci', 'Sc22g0001100' => 'sci', 'Sed0000617' => 'sed', 'Sed0004190' => 'sed', 'Sed0005551' => 'sed', 'Sed0005759' => 'sed', 'Sed0018363' => 'sed', 'Sed0020063' => 'sed', 'Sed0021310' => 'sed', 'Sed0022032' => 'sed', 'Sed0026781' => 'sed', 'Sed0027273' => 'sed', 'SEGI_01961' => 'sgi', 'SEGI_11362' => 'sgi', 'SEGI_19247' => 'sgi', 'SEGI_39113' => 'sgi', 'SGA_v2.0_scaffold11G05535' => 'sas', 'SGA_v2.0_scaffold120G32881' => 'sas', 'SGA_v2.0_scaffold146G36156' => 'sas', 'SGA_v2.0_scaffold153G36969' => 'sas', 'SGA_v2.0_scaffold153G36977' => 'sas', 'SGA_v2.0_scaffold257G45727' => 'sas', 'SGA_v2.0_scaffold399G50786' => 'sas', 'SGA_v2.0_scaffold399G50792' => 'sas', 'SGA_v2.0_scaffold43G16512' => 'sas', 'SGA_v2.0_scaffold57G20257' => 'sas', 'SGA_v2.0_scaffold6G03138' => 'sas', 'SMO143G0223' => 'smo', 'SMO228G0180' => 'smo', 'SMO356G0355' => 'smo', 'SMO364G0754' => 'smo', 'Solyc01g067720.4' => 'sly', 'Solyc01g090910.3' => 'sly', 'Solyc01g090990.3' => 'sly', 'Solyc01g098200.3' => 'sly', 'Solyc06g034220.3' => 'sly', 'Solyc08g007200.4' => 'sly', 'Solyc08g007390.2' => 'sly', 'Solyc08g078000.3' => 'sly', 'Solyc08g078690.3' => 'sly', 'Solyc10g018350.2' => 'sly', 'Sopen01g029650' => 'spe', 'Sopen01g036650' => 'spe', 'Sopen01g036720' => 'spe', 'Sopen01g041780' => 'spe', 'Sopen06g010900' => 'spe', 'Sopen08g003150' => 'spe', 'Sopen08g003340' => 'spe', 'Sopen08g026510' => 'spe', 'Sopen08g027170' => 'spe', 'Sopen10g007590' => 'spe', 'Sp1g07460' => 'spa', 'Sp2g05150' => 'spa', 'Sp2g11980' => 'spa', 'Sp4g27200' => 'spa', 'Sp5g02630' => 'spa', 'Sp6g00230' => 'spa', 'TAR082G0003' => 'tar', 'TAR362G0727' => 'tar', 'TAR369G1031' => 'tar', 'TAR374G1454' => 'tar', 'TAR375G0901' => 'tar', 'TAR375G0925' => 'tar', 'TAR629G1378' => 'tar', 'TAR629G3241' => 'tar', 'TAR633G1254' => 'tar', 'TAR633G2010' => 'tar', 'TAR636G0140' => 'tar', 'TAR636G1458' => 'tar', 'THA.LOC104798371' => 'tha', 'THA.LOC104801475' => 'tha', 'THA.LOC104802469' => 'tha', 'THA.LOC104805836' => 'tha', 'THA.LOC104806680' => 'tha', 'THA.LOC104808032' => 'tha', 'THA.LOC104812804' => 'tha', 'THA.LOC104812814' => 'tha', 'THA.LOC104817011' => 'tha', 'THA.LOC104817219' => 'tha', 'THA.LOC104823742' => 'tha', 'Thecc.01G381000' => 'tca', 'Thecc.01G382700' => 'tca', 'Thecc.03G243000' => 'tca', 'Thecc.03G252600' => 'tca', 'Thecc.04G276400' => 'tca', 'Thecc.05G254100' => 'tca', 'Thecc.08G136400' => 'tca', 'Thhalv10001019m.g' => 'esa', 'Thhalv10001649m.g' => 'esa', 'Thhalv10006213m.g' => 'esa', 'Thhalv10007714m.g' => 'esa', 'Thhalv10028931m.g' => 'esa', 'TPR.G14948' => 'tpr', 'TPR.G25759' => 'tpr', 'TPR.G25873' => 'tpr', 'TPR.G2712' => 'tpr', 'TPR.G31426' => 'tpr', 'TPR.G37636' => 'tpr', 'TPR.G39087' => 'tpr', 'TPR.G39673' => 'tpr', 'TPR.G4949' => 'tpr', 'TPR.G4983' => 'tpr', 'TWI14G0949' => 'twi', 'TWI23G0188' => 'twi', 'TWI23G0573' => 'twi', 'TWI23G1281' => 'twi', 'TWI36G1661' => 'twi', 'TWI56G1204' => 'twi', 'TWI59G0779' => 'twi', 'TWI59G1374' => 'twi', 'TWI60G0186' => 'twi', 'TWI60G0611' => 'twi', 'TWI81G0139' => 'twi', 'TWI81G0165' => 'twi', 'unitig_0.g1306' => 'ugi', 'unitig_11.g32405' => 'ugi', 'unitig_26.g8889' => 'ugi', 'unitig_32.g11747' => 'ugi', 'unitig_61.g26413' => 'ugi', 'unitig_61.g26414' => 'ugi', 'unitig_748.g8572' => 'ugi', 'unitig_750.g28394' => 'ugi', 'unitig_76.g29079' => 'ugi', 'unitig_8.g3832' => 'ugi', 'vmacro00043' => 'vma', 'vmacro05064' => 'vma', 'vmacro09909' => 'vma', 'vmacro13443' => 'vma', 'vmacro14129' => 'vma', 'vmacro14130' => 'vma', 'vmacro15266' => 'vma', 'vmacro21027' => 'vma', 'vmacro21030' => 'vma', 'vmacro22437' => 'vma', 'VMungo0251G2238' => 'vmu', 'VMungo0331G1752' => 'vmu', 'VMungo1215G2573' => 'vmu', 'VMungo1215G2795' => 'vmu', 'VMungo1215G2931' => 'vmu', 'Zm00001eb013090' => 'zma', 'Zm00001eb043990' => 'zma', 'Zm00001eb141890' => 'zma', 'Zm00001eb172580' => 'zma', 'Zm00001eb185980' => 'zma', 'Zm00001eb186290' => 'zma', 'Zm00001eb186710' => 'zma', 'Zm00001eb223690' => 'zma', 'Zm00001eb248630' => 'zma', 'Zm00001eb249150' => 'zma', 'Zm00001eb271840' => 'zma', 'Zm00001eb351060' => 'zma', 'Zm00001eb363370' => 'zma', 'Zm00001eb416110' => 'zma', 'Zm00001eb427430' => 'zma' ) $gf_id = 'HOM05D000584' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000584' ) $data_identifier = 'HOM05D000584' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 23, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 11, 'fan' => (int) 33, 'fve' => (int) 6, 'gma' => (int) 16, 'ghi' => (int) 29, 'gra' => (int) 15, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 6, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 14, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 15, 'cme' => (int) 8, 'egut' => (int) 12, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 9, 'oeu' => (int) 13, 'osa' => (int) 14, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 6, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 10, 'sbo' => (int) 6, 'sci' => (int) 10, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 11, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 10, 'spa' => (int) 6, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 12, 'ugi' => (int) 10, 'vma' => (int) 10, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427430' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1